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View Structure Prediction Details

Protein: POP4
Organism: Saccharomyces cerevisiae
Length: 279 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POP4.

Description E-value Query
Range		 Subject
Range
POP4_YEAST - RNases MRP/P 32.9 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POP4 PE=1 ...
POP4 - Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursor...
gi|207347488 - gi|207347488|gb|EDZ73642.1| YBR257Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190408592 - gi|190408592|gb|EDV11857.1| RNases MRP/P 32.9 kDa subunit [Saccharomyces cerevisiae RM11-1a]
gi|151946644 - gi|151946644|gb|EDN64866.1| RNase MRP subunit [Saccharomyces cerevisiae YJM789]
 0.0 [1..279] [1..279]
gi|123992762, gi... - gi|123999500|gb|ABM87306.1| processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) [s...
POP4 - processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)
 6.0E-57 [63..273] [9..220]
RPP29_MOUSE - Ribonuclease P protein subunit p29 OS=Mus musculus GN=Pop4 PE=2 SV=1
 4.0E-55 [64..273] [10..221]
CG8038-PA - This gene is referred to in FlyBase by the symbol Dmel\CG8038 (CG8038, FBgn0035831). It is a protein...
 4.0E-31 [130..266] [65..199]
CE18505 - status:Partially_confirmed UniProt:Q9XVT1 protein_id:CAB02730.1
 2.0E-29 [135..269] [61..178]
gi|18406178, gi|... - gi|21554179|gb|AAM63258.1| unknown [Arabidopsis thaliana], gi|20197152|gb|AAC64308.2| expressed prot...
 4.0E-27 [133..256] [184..290]
RNP1_PYRFU - Ribonuclease P protein component 1 OS=Pyrococcus furiosus GN=rnp1 PE=1 SV=1
RNP1_PYRFU - Ribonuclease P protein component 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /...
 2.0E-26 [171..266] [41..126]
RNP1_PYRAB - Ribonuclease P protein component 1 OS=Pyrococcus abyssi GN=rnp1 PE=3 SV=1
RNP1_PYRAB - Ribonuclease P protein component 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnp1 PE=3 SV=1
 2.0E-26 [171..266] [41..125]
RNP1_PYRHO - Ribonuclease P protein component 1 OS=Pyrococcus horikoshii GN=rnp1 PE=1 SV=1
RNP1_PYRHO - Ribonuclease P protein component 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...
 4.0E-26 [171..266] [41..125]

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Predicted Domain #1
Region A:
Residues: [1-162] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRTQTFIKD CLFTKCLEDP EKPFNENRFQ DTLLLLPTDG GLTSRLQRQQ RKSKLNLDNL  60
   61 QKVSQLESAD KQLEKRDYQR INKNSKIALR EYINNCKKNT KKCLKLAYEN KITDKEDLLH 120
  121 YIEEKHPTIY ESLPQYVDFV PMYKELWINY IKELLNITKN LK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [163-279] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFNGSLALLK LSMADYNGAL LRVTKSKNKT LIGLQGIVIW DSQKFFIMIV KGNIIDEIKC  60
   61 IPKKGTVFQF EIPISDDDDS ALRYSILGDR FKYRSVDRAG RKFKSRRCDD MLYYIQN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
transcription regulator activity 2.22645124912591 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle