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View Structure Prediction Details

Protein: YBR238C
Organism: Saccharomyces cerevisiae
Length: 731 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR238C.

Description E-value Query
Range
Subject
Range
YBR238C - Mitochondrial membrane protein with similarity to Rmd9p; not required for respiratory growth but cau...
RMD9L_YEAST - Protein RMD9-like, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR238C...
gi|151946624 - gi|151946624|gb|EDN64846.1| conserved protein [Saccharomyces cerevisiae YJM789]
0.0 [1..731] [1..731]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.003 [84..134] [197..249]
gi|575365 - gi|575365|emb|CAA56732.1| cdc2-related protein kinase 1 [Plasmodium falciparum]
0.005 [84..134] [246..298]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLAQQTQV LKGKPPNQFV PHPTKNSLTH PMKFNGTIAM EHHEHNYAIP YTPATFNNPA  60
   61 LATYQVSPAN HFVPHFGGNI GANNNNHLAQ NNSNNSN

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.36
Match: 1l8mA
Description: No description for 1l8mA was found.

Predicted Domain #2
Region A:
Residues: [98-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHHNNNRNHH HNNNRNHHQN NHNHSKYNNS NQGNSISPDS PWFHKVCAFE DCVSQTLYMS  60
   61 QTPRRQNMKH 

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.36
Match: 1l8mA
Description: No description for 1l8mA was found.

Predicted Domain #3
Region A:
Residues: [168-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSEHPNSNAN PLFWDSIGRA MGLYHDLLTT PELNSDRVSK LVHLLHNGLR ANRNQLTRMN  60
   61 KKPDYDSQSF HKEMTNYLCK SLREISEDVL NGKVELNEYG AMHLITAFKE LLLFEEAVDI 120
  121 WKAAIN

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.36
Match: 1l8mA
Description: No description for 1l8mA was found.

Predicted Domain #4
Region A:
Residues: [294-731]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQNTYTSNIF LNPRVVGVIL PILYDNGVSY PEIQALYEKS SSMINYFHPN LSVGMIRASL  60
   61 SASENDMALK LFQKLCQEST EMKYGYLIET HLSFIGECKD LNVAQTFFDK ALNDEMPYKI 120
  121 DLQVSYVKSF LRNIWSQTRD FNHIYQIWYK SSLHYGRNVN HGISSSLNDT FFDIFFENYA 180
  181 VDKMQGFQTL QNIIQTYNNI KHIDEPFFNI ILAKCTVWHD RSILEYIDKS YEAYHIPKTI 240
  241 VAYRILLKSM GSVDDASNAE ILQRWMDLIR KSDEIGQRFI ANADWAALRD ATVTWTQNDR 300
  301 DSKKSNMNST QISRTATPSP SLTPMDTPAP EHLFNNPQNP MDFYSHPALQ AATASGAFDE 360
  361 FAAEAASSSI PVDGRMVLYL KIVKRYSPYC RDSRQLARLT TGTAVKYSVL QEVLNQFQTL 420
  421 IVNDIPIPEL HNLKPTCV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle