| Protein: | HPC2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 623 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HPC2.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-52 | [6..589] | [481..1073] |
|
|
8.0E-49 | [32..489] | [547..1003] |
|
|
1.0E-48 | [11..590] | [1..589] |
|
|
3.0E-48 | [102..570] | [42..479] |
|
Region A: Residues: [1-82] |
1 11 21 31 41 51
| | | | | |
1 MIAIVLDNSK SGSKQTKSSG KMQTQTDTNA EVLNTDNSIK KETGSDSEDL FNKFSNKKTN 60
61 RKIPNIAEEL AKNRNYVKGA SP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [83-408] |
1 11 21 31 41 51
| | | | | |
1 SPIIISGSSS TSPSGPSSSS TNPMGIPTNR FNKNTVELYQ HSPSPVMTTN KTDTEEKRQN 60
61 NRNMDNKNTP ERGSSSFAAK QLKISSLLTI SSNEDSKTLH INDTNGNKNS NAASNNIPSA 120
121 YAELHTEGNS IESLIKPPSS PRNKSLTPKV ILPTQNMDGT IAKDPHLGDN TPGILIAKTS 180
181 SPVNLDVEST AQSLGKFNKS TNSLKAALTK APAEKVSLKR SISSVTNSDS NISSSKKPTS 240
241 EKAKKSSSAS AILPKPTTTK TSKKAASNSS DSTRKKNASN KTTSAIKKES NAGSKLNTVK 300
301 KENSSLSSIK ATEKEKDKGG NSTEAK
|
| Detection Method: | |
| Confidence: | 13.11 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [409-623] |
1 11 21 31 41 51
| | | | | |
1 NSTSNVRKEP TAKSPKRLVA APTVSPPKIL QTAETKAKEP SILIDVPLYQ ADTNDYLDEN 60
61 GQVIFNLSTL IKEKYHPKSK ELAQLKDSKR NLLMQLSDHS NGSLEKEKDE EGDVIELDDD 120
121 EDMEEDEGEI DTETNTVTTT ISPKKKSHPM KGKNLIGKYD VEDPFIDDSE LLWEEQRAAT 180
181 KDGFFVYFGP LIEKGHYASL ERANGTMKRG GVKNK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
