| Protein: | HPC2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 623 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HPC2.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-52 | [6..589] | [481..1073] |
|
|
8.0E-49 | [32..489] | [547..1003] |
|
|
1.0E-48 | [11..590] | [1..589] |
|
|
3.0E-48 | [102..570] | [42..479] |
|
Region A: Residues: [1-82] |
1 11 21 31 41 51
| | | | | |
1 MIAIVLDNSK SGSKQTKSSG KMQTQTDTNA EVLNTDNSIK KETGSDSEDL FNKFSNKKTN 60
61 RKIPNIAEEL AKNRNYVKGA SP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.243 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.211 | b.55.1 | PH domain-like |
| View | Download | 0.372 | d.82.1 | Copper amine oxidase, domain N |
|
Region A: Residues: [83-408] |
1 11 21 31 41 51
| | | | | |
1 SPIIISGSSS TSPSGPSSSS TNPMGIPTNR FNKNTVELYQ HSPSPVMTTN KTDTEEKRQN 60
61 NRNMDNKNTP ERGSSSFAAK QLKISSLLTI SSNEDSKTLH INDTNGNKNS NAASNNIPSA 120
121 YAELHTEGNS IESLIKPPSS PRNKSLTPKV ILPTQNMDGT IAKDPHLGDN TPGILIAKTS 180
181 SPVNLDVEST AQSLGKFNKS TNSLKAALTK APAEKVSLKR SISSVTNSDS NISSSKKPTS 240
241 EKAKKSSSAS AILPKPTTTK TSKKAASNSS DSTRKKNASN KTTSAIKKES NAGSKLNTVK 300
301 KENSSLSSIK ATEKEKDKGG NSTEAK
|
| Detection Method: | |
| Confidence: | 13.11 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [409-623] |
1 11 21 31 41 51
| | | | | |
1 NSTSNVRKEP TAKSPKRLVA APTVSPPKIL QTAETKAKEP SILIDVPLYQ ADTNDYLDEN 60
61 GQVIFNLSTL IKEKYHPKSK ELAQLKDSKR NLLMQLSDHS NGSLEKEKDE EGDVIELDDD 120
121 EDMEEDEGEI DTETNTVTTT ISPKKKSHPM KGKNLIGKYD VEDPFIDDSE LLWEEQRAAT 180
181 KDGFFVYFGP LIEKGHYASL ERANGTMKRG GVKNK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
