| Protein: | GDT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 280 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GDT1.
| Description | E-value | Query Range |
Subject Range |
|
|
311.0 | [0..9] | [273..59] |
|
|
309.0 | [0..8] | [273..58] |
|
|
307.0 | [0..8] | [273..59] |
|
|
300.0 | [0..14] | [273..71] |
|
|
300.0 | [0..19] | [273..132] |
|
|
295.0 | [0..8] | [273..58] |
|
|
292.0 | [0..8] | [273..58] |
|
Region A: Residues: [1-127] |
1 11 21 31 41 51
| | | | | |
1 MGNMIKKASL IALLPLFTAA AAAATDAETS MESGSSSHLK SFLMSVSMIG LSEIGDKTFL 60
61 IAALMAMRHK RVLVFSAAAT SLAIMTILSG VVGHSAVAFL SERYTAFFAG ILFLVFGYKL 120
121 TMEGLEM
|
| Detection Method: |  |
| Confidence: | 39.0 |
| Match: | PF01169 |
| Description: | Uncharacterized protein family UPF0016 |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.978 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.905 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.808 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.799 | N/A | N/A | a.24.26 | Description not found. |
| View | Download | 0.787 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.787 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.736 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.724 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.691 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.677 | N/A | N/A | a.25.1 | Ferritin-like |
|
Region A: Residues: [128-188] |
1 11 21 31 41 51
| | | | | |
1 SKDAGVEEEM AEVEEEIAIK DMNQDMDDVE KGGDTAYDKQ LKNASIGKKI VHRIRELASF 60
61 M
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.767 | a.159.2 | FF domain |
| View | Download | 0.721 | a.4.1 | Homeodomain-like |
| View | Download | 0.721 | a.4.1 | Homeodomain-like |
| View | Download | 0.714 | a.4.1 | Homeodomain-like |
| View | Download | 0.714 | a.4.1 | Homeodomain-like |
| View | Download | 0.702 | a.159.2 | FF domain |
| View | Download | 0.685 | a.4.1 | Homeodomain-like |
| View | Download | 0.657 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [189-280] |
1 11 21 31 41 51
| | | | | |
1 FSPVWVQIFL MVFLGELGDR SQISIIAMAT DSDYWYVIAG AVIGHAICSG LAVVGGKLLA 60
61 TRISIRTITL ASSLLFFIFA LMYIYQAFTT QD
|
| Detection Method: | |
| Confidence: | 42.823909 |
| Match: | PF01169 |
| Description: | Uncharacterized protein family UPF0016 |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.892 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.892 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.887 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.876 | N/A | N/A | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.876 | N/A | N/A | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.872 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.872 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.866 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.866 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.860 | N/A | N/A | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
