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View Structure Prediction Details

Protein: RPS6A, RPS6B
Organism: Saccharomyces cerevisiae
Length: 236 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS6A, RPS6B.

Description E-value Query
Range		 Subject
Range
RS6_CHICK - 40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1
 3.0E-91 [1..236] [1..239]
RS6_MACFA - 40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1
gi|123996699, gi... - gi|61359219|gb|AAX41685.1| ribosomal protein S6 [synthetic construct], gi|123996699|gb|ABM85951.1| r...
ENSOCUP000000188... - pep:novel chromosome:oryCun2:2:33642929:33643727:1 gene:ENSOCUG00000028076 transcript:ENSOCUT0000002...
ENSCJAT00000040479 - null
gi|57093617 - gi|57093617|ref|XP_531949.1| PREDICTED: similar to 40S ribosomal protein S6 [Canis familiaris]
RPS6 - ribosomal protein S6
gi|109111439 - gi|109111439|ref|XP_001109421.1| PREDICTED: similar to 40S ribosomal protein S6 isoform 6 [Macaca mu...
RS6_MOUSE - 40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1
RS6_RAT - 40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1
gi|149736868 - gi|149736868|ref|XP_001496413.1| PREDICTED: similar to ribosomal protein S6 [Equus caballus]
 5.0E-91 [1..236] [1..239]
gi|15342049 - gi|15342049|gb|AAH13296.1| Ribosomal protein S6 [Homo sapiens]
 1.0E-90 [1..236] [1..239]
RS6_ICTPU - 40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1
 8.0E-90 [1..236] [1..239]
RS6_XENLA - 40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1
 1.0E-89 [1..236] [1..239]
RS6_ONCMY - 40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1
 2.0E-89 [1..236] [1..239]
RpS6-PB - The gene Ribosomal protein S6 is referred to in FlyBase by the symbol Dmel\RpS6 (CG10944, FBgn000492...
 2.0E-86 [1..235] [1..237]

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Predicted Domain #1
Region A:
Residues: [1-130] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNISYPVN GSQKTFEIDD EHRIRVFFDK RIGQEVDGEA VGDEFKGYVF KISGGNDKQG  60
   61 FPMKQGVLLP TRIKLLLTKN VSCYRPRRDG ERKRKSVRGA IVGPDLAVLA LVIVKKGEQE 120
  121 LEGLTDTTVP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 80.853872
Match: PF01092
Description: Ribosomal protein S6e

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-236] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRLGPKRANN IRKFFGLSKE DDVRDFVIRR EVTKGEKTYT KAPKIQRLVT PQRLQRKRHQ  60
   61 RALKVRNAQA QREAAAEYAQ LLAKRLSERK AEKAEIRKRR ASSLKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle