| Protein: | CNS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 385 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNS1.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-80 | [1..385] | [1..385] |
|
|
2.0E-55 | [33..378] | [14..352] |
|
|
1.0E-52 | [23..361] | [18..368] |
|
|
2.0E-47 | [23..361] | [18..369] |
|
|
2.0E-46 | [10..294] | [136..421] |
|
|
1.0E-43 | [10..326] | [250..565] |
|
Region A: Residues: [1-134] |
1 11 21 31 41 51
| | | | | |
1 MSSVNANGGY TKPQKYVPGP GDPELPPQLS EFKDKTSDEI LKEMNRMPFF MTKLDETDGA 60
61 GGENVELEAL KALAYEGEPH EIAENFKKQG NELYKAKRFK DARELYSKGL AVECEDKSIN 120
121 ESLYANRAAC ELEL
|
| Detection Method: |  |
| Confidence: | 103.211549 |
| Match: | 1ihgA_ |
| Description: | Cyclophilin 40; Cyclophilin 40 isomerase domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.12690485191789 | bayes_pls_golite062009 |
| protein binding | 1.37554190575452 | bayes_pls_golite062009 |
| heat shock protein binding | 1.35268080101836 | bayes_pls_golite062009 |
| unfolded protein binding | 1.03065657981002 | bayes_pls_golite062009 |
| nucleic acid binding | 0.41706917101675 | bayes_pls_golite062009 |
| transcription regulator activity | 0.194719472400022 | bayes_pls_golite062009 |
| DNA binding | 0.17736976899009 | bayes_pls_golite062009 |
|
Region A: Residues: [135-287] |
1 11 21 31 41 51
| | | | | |
1 KNYRRCIEDC SKALTINPKN VKCYYRTSKA FFQLNKLEEA KSAATFANQR IDPENKSILN 60
61 MLSVIDRKEQ ELKAKEEKQQ REAQERENKK IMLESAMTLR NITNIKTHSP VELLNEGKIR 120
121 LEDPMDFESQ LIYPALIMYP TQDEFDFVGE VSE
|
| Detection Method: | |
| Confidence: | 103.211549 |
| Match: | 1ihgA_ |
| Description: | Cyclophilin 40; Cyclophilin 40 isomerase domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [288-385] |
1 11 21 31 41 51
| | | | | |
1 LTTVQELVDL VLEGPQERFK KEGKENFTPK KVLVFMETKA GGLIKAGKKL TFHDILKKES 60
61 PDVPLFDNAL KIYIVPKVES EGWISKWDKQ KALERRSV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.338 | b.55.1 | PH domain-like |
| View | Download | 0.501 | a.118.1 | ARM repeat |
| View | Download | 0.423 | a.3.1 | Cytochrome c |
| View | Download | 0.357 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.313 | g.10.1 | Hairpin loop containing domain-like |
| View | Download | 0.301 | a.29.2 | Bromodomain |
| View | Download | 0.301 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.296 | b.55.1 | PH domain-like |
| View | Download | 0.287 | a.3.1 | Cytochrome c |
| View | Download | 0.284 | b.1.1 | Immunoglobulin |
| View | Download | 0.279 | d.169.1 | C-type lectin-like |
| View | Download | 0.275 | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.267 | d.110.1 | Profilin (actin-binding protein) |
| View | Download | 0.241 | d.15.8 | Translation initiation factor IF3, N-terminal domain |
| View | Download | 0.230 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.204 | c.53.1 | Resolvase-like |
