| Protein: | TFC1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 649 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFC1.
| Description | E-value | Query Range |
Subject Range |
|
|
554.0 | [0..30] | [645..25] |
|
|
514.0 | [0..26] | [649..57] |
|
|
500.0 | [0..1] | [649..1] |
|
|
441.0 | [0..56] | [499..21] |
|
|
437.0 | [0..56] | [503..36] |
|
|
437.0 | [0..56] | [503..27] |
|
|
436.0 | [0..56] | [503..36] |
|
Region A: Residues: [1-540] |
1 11 21 31 41 51
| | | | | |
1 MPVEEPLATL SSIPDSSADQ APPLIADEFT LDLPRIPSLE LPLNVSTKHS SIQKAIKMCG 60
61 GIEKVKEAFK EHGPIESQHG LQLYLNDDTD SDGSKSYFNE HPVIGKRVPF RDESVILKVT 120
121 MPKGTLSKNN NSVKDSIKSL KDSNKLRVTP VSIVDNTIKF REMSDFQIKL DNVPSAREFK 180
181 SSFGSLEWNN FKSFVNSVPD NDSQPQENIG NLILDRSVKI PSTDFQLPPP PKLSMVGFPL 240
241 LYKYKANPFA KKKKNGVTEV KGTYIKNYQL FVHDLSDKTV IPSQAHEQVL YDFEVAKKTK 300
301 VYPGTKSDSK FYESLEECLK ILRELFARRP IWVKRHLDGI VPKKIHHTMK IALALISYRF 360
361 TMGPWRNTYI KFGIDPRSSV EYAQYQTEYF KIERKLLSSP IVKKNVPKPP PLVFESDTPG 420
421 GIDSRFKFDG KRIPWYLMLQ IDLLIGEPNI AEVFHNVEYL DKANELTGWF KELDLVKIRR 480
481 IVKYELGCMV QGNYEYNKYK LKYFKTMLFV KESMVPENKN SEEGMGVNTN KDADGDINMD 540
541
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [541-649] |
1 11 21 31 41 51
| | | | | |
1 AGSQMSSNAI EEDKGIAAGD DFDDNGAITE EPDDAALENE EMDTDQNLKV PASIDDDVDD 60
61 VDADEEEQES FDVKTASFQD IINKIAKLDP KTAETMKSEL KGFVDEVDL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.397 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.380 | a.1.1 | Globin-like |
| View | Download | 0.367 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.318 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.299 | f.56.1 | Description not found. |
| View | Download | 0.267 | a.74.1 | Cyclin-like |
| View | Download | 0.265 | a.74.1 | Cyclin-like |
| View | Download | 0.208 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.208 | a.1.1 | Globin-like |
| View | Download | 0.208 | a.74.1 | Cyclin-like |
