| Protein: | EXO84 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 753 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EXO84.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..753] | [1..753] |
|
|
0.0 | [168..748] | [4..541] |
|
|
0.0 | [111..744] | [4..569] |
|
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0.0 | [175..745] | [2..493] |
|
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2.0E-67 | [449..737] | [38..337] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MVEFSLKKAR NNWKHVKKSA SSPAKQKTPP SPAKPKQKTK KNPYSDLKDP ATSYTLPTIN 60
61 ARERSRVATS MQRRLSIHNT NYAPPTLDYS MPLPDMPNMI VPNDNVDSSH NNSSFTTENE 120
121 SVSSKGPSNS LNLSTADLSL NDSSYNKVPA RSAMRNT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [158-279] |
1 11 21 31 41 51
| | | | | |
1 VNPSGSNDPF NNSTSLRKML ANPHFNAKDF VHDKLGNASA ITIDKFTSNL TDLSIQVQEE 60
61 VKLNINKSYN EIMTVNNDLN VAMLELKRVR ANINDLNEVL DQCTKIAEKR LQLQDQIDQE 120
121 RQ
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.801 | 0.212 | spliceosome assembly | a.25.1 | Ferritin-like |
| View | Download | 0.732 | 0.050 | spliceosome assembly | a.24.3 | Cytochromes |
| View | Download | 0.818 | 0.043 | spliceosome assembly | a.7.1 | Spectrin repeat |
| View | Download | 0.769 | 0.012 | spliceosome assembly | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.724 | 0.005 | spliceosome assembly | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
| View | Download | 0.824 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.820 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.735 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.720 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.712 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.709 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.676 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.645 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.645 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.623 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.598 | N/A | N/A | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.575 | N/A | N/A | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.548 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.537 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.533 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.499 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.491 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.477 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.459 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.450 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.447 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.440 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.437 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.428 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.425 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.420 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.414 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.403 | N/A | N/A | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.402 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.401 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.384 | N/A | N/A | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.377 | N/A | N/A | f.17.2 | Cytochrome c oxidase subunit II-like, transmembrane region |
| View | Download | 0.369 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.367 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.366 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.361 | N/A | N/A | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.360 | N/A | N/A | a.23.3 | Methane monooxygenase hydrolase, gamma subunit |
| View | Download | 0.360 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.357 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.354 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.353 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.352 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.348 | N/A | N/A | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.348 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.341 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.338 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.336 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.336 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.333 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.328 | N/A | N/A | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.323 | N/A | N/A | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.322 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.320 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.318 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.310 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.305 | N/A | N/A | a.166.1 | RuBisCo LSMT C-terminal, substrate-binding domain |
| View | Download | 0.304 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.302 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.302 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.297 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.290 | N/A | N/A | d.224.1 | SufE-like |
| View | Download | 0.288 | N/A | N/A | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.288 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.286 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.283 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.280 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.277 | N/A | N/A | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.272 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.270 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.264 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.264 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.260 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.259 | N/A | N/A | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.258 | N/A | N/A | d.224.1 | SufE-like |
| View | Download | 0.257 | N/A | N/A | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.252 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.251 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.249 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.249 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.242 | N/A | N/A | d.25.1 | Acidic mitochondrial matrix protein p32 |
| View | Download | 0.241 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.238 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.236 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.232 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.232 | N/A | N/A | a.2.5 | Prefoldin |
| View | Download | 0.230 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.228 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.224 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.222 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.220 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.215 | N/A | N/A | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.212 | N/A | N/A | a.79.1 | Antitermination factor NusB |
| View | Download | 0.212 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.209 | N/A | N/A | a.182.1 | GatB/YqeY domain |
| View | Download | 0.206 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.201 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.201 | N/A | N/A | a.1.1 | Globin-like |
|
Region A: Residues: [280-341] |
1 11 21 31 41 51
| | | | | |
1 GNFNNVESHS NSPALLPPLK AGQNGNLMRR DRSSVLILEK FWDTELDQLF KNVEGAQKFI 60
61 NS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.413 | a.4.1 | Homeodomain-like |
| View | Download | 0.626 | d.58.17 | Metal-binding domain |
| View | Download | 0.526 | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.454 | d.58.17 | Metal-binding domain |
| View | Download | 0.418 | d.58.17 | Metal-binding domain |
| View | Download | 0.375 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.371 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.343 | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.316 | a.4.1 | Homeodomain-like |
| View | Download | 0.306 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.298 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.286 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.283 | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.275 | a.60.8 | HRDC-like |
| View | Download | 0.275 | d.58.5 | GlnB-like |
| View | Download | 0.275 | g.41.10 | Zn-finger domain of Sec23/24 |
| View | Download | 0.265 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.257 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.255 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.240 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.234 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.227 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.220 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.202 | d.93.1 | SH2 domain |
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Region A: Residues: [342-480] |
1 11 21 31 41 51
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1 TKGRHILMNS ANWMELNTTT GKPLQMVQIF ILNDLVLIAD KSRDKQNDFI VSQCYPLKDV 60
61 TVTQEEFSTK RLLFKFSNSN SSLYECRDAD ECSRLLDVIR KAKDDLCDIF HVEEENSKRI 120
121 RESFRYLQST QQTPGRENN
|
| Detection Method: | |
| Confidence: | 3.09691 |
| Match: | 1awe__ |
| Description: | Son of sevenless-1 (sos-1) |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [481-753] |
1 11 21 31 41 51
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1 RSPNKNKRRS MGGSITPGRN VTGAMDQYLL QNLTLSMHSR PRSRDMSSTA QRLKFLDEGV 60
61 EEIDIELARL RFESAVETLL DIESQLEDLS ERISDEELML LNLISLKIEQ RREAISSKLS 120
121 QSILSSNEIV HLKSGTENMI KLGLPEQALD LFLQNRSNFI QDLILQIGSV DNPTNYLTQL 180
181 AVIRFQTIKK TVEDFQDIFK ELGAKISSIL VDWCSDEVDN HFKLIDKQLL NDEMLSPGSI 240
241 KSSRKQIDGL KAVGLDFVYK LDEFIKKNSD KIR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
