| Protein: | RPG1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 964 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPG1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [9..961] | [989..1928] |
|
|
0.0 | [9..961] | [991..1930] |
|
|
0.0 | [9..961] | [990..1929] |
|
|
0.0 | [9..961] | [990..1929] |
|
|
0.0 | [9..961] | [990..1929] |
|
|
0.0 | [9..961] | [992..1931] |
|
Region A: Residues: [1-158] |
1 11 21 31 41 51
| | | | | |
1 MAPPPFRPEN AIKRADELIS VGEKQAALQS LHDFITARRI RWATPSTVEP VVFKFLEIGV 60
61 ELKKGKLLKD GLHQYKKLIQ GSTEGLVSVG AVARKFIDLV ESKIASEQTR ADELQKQEID 120
121 DDLEGGVTPE NLLISVYESD QSVAGFNDEA ITSWLRFT
|
| Detection Method: |  |
| Confidence: | 11.47 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [159-285] |
1 11 21 31 41 51
| | | | | |
1 WESYRAVLDL LRNNALLEIT YSGVVKKTMH FCLKYQRKNE FKRLAEMLRQ HLDAANYQQS 60
61 KSGNNLVDLS DADTLQRYLD QRFQQVDVSV KLELWHEAYR SIEDVFHLMK ISKRAPKPST 120
121 LANYYEN
|
| Detection Method: | |
| Confidence: | 11.47 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [286-451] |
1 11 21 31 41 51
| | | | | |
1 LVKVFFVSGD PLLHTTAWKK FYKLYSTNPR ATEEEFKTYS STIFLSAIST QLDEIPSIGY 60
61 DPHLRMYRLL NLDAKPTRKE MLQSIIEDES IYGKVDEELK ELYDIIEVNF DVDTVKQQLE 120
121 NLLVKLSSKT YFSQYIAPLR DVIMRRVFVA ASQKFTTVSQ SELYKL
|
| Detection Method: | |
| Confidence: | 11.47 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [452-521] |
1 11 21 31 41 51
| | | | | |
1 ATLPAPLDLS AWDIEKSLLQ AAVEDYVSIT IDHESAKVTF AKDPFDIFAS TASKEVSEEE 60
61 NTEPEVQEEK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
|
Region A: Residues: [522-610] |
1 11 21 31 41 51
| | | | | |
1 EETDEALGPQ ETEDGEEKEE ESDPVIIRNS YIHNKLLELS NVLHDVDSFN NASYMEKVRI 60
61 ARETLIKKNK DDLEKISKIV DERVKRSQE
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [611-964] |
1 11 21 31 41 51
| | | | | |
1 QKQKHMEHAA LHAEQDAEVR QQRILEEKAA IEAKLEEEAH RRLIEKKKRE FEAIKEREIT 60
61 KMITEVNAKG HVYIDPNEAK SLDLDTIKQV IIAEVSKNKS ELESRMEYAM KKLDHTERAL 120
121 RKVELPLLQK EVDKLQETDT ANYEAMKKKI VDAAKAEYEA RMADRKNLVM VYDDYLKFKE 180
181 HVSGTKESEL AAIRNQKKAE LEAAKKARIE EVRKRRYEEA IARRKEEIAN AERQKRAQEL 240
241 AEATRKQREI EEAAAKKSTP YSFRAGNREP PSTPSTLPKA TVSPDKAKLD MIAQKQREME 300
301 EAIEQRLAGR TAGGSSPATP ATPATPATPT PSSGPKKMTM AEKLRAKRLA KGGR
|
| Detection Method: | |
| Confidence: | 13.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
