| Protein: | PRP6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 899 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP6.
| Description | E-value | Query Range |
Subject Range |
|
|
496.0 | [0..2] | [895..36] |
|
|
494.0 | [0..3] | [896..14] |
|
|
491.0 | [0..2] | [895..4] |
|
|
490.0 | [0..2] | [895..4] |
|
|
488.0 | [0..2] | [895..63] |
|
|
488.0 | [0..2] | [895..12] |
|
|
488.0 | [0..2] | [895..4] |
|
|
487.0 | [0..3] | [892..14] |
|
|
486.0 | [0..2] | [895..4] |
|
Region A: Residues: [1-123] |
1 11 21 31 41 51
| | | | | |
1 MERPSFLDQE PPAGYVPGIG RGATGFSTKE KQVVSNDDKG RRIPKRYREN LNNHLQSQPK 60
61 DDEDDEAANV FKTLELKLAQ KKKKRANEKD DDNSVDSSNV KRQFADLKES LAAVTESEWM 120
121 DIP
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.670 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.670 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.654 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.654 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.601 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.578 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.578 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.558 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.529 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.478 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
|
Region A: Residues: [124-274] |
1 11 21 31 41 51
| | | | | |
1 DATDFTRRNK RNRIQEQLNR KTYAAPDSLI PGNVDLNKLT EEREKLLQSQ IDENLAQLTK 60
61 NASNPIQVNK PNAATDALSY LKDLENDRVN SLSDATLEDL QKMRTILKSY RKADPTNPQG 120
121 WIASARLEEK ARKFSVAKKI IENGCQECPR S
|
| Detection Method: | |
| Confidence: | 14.34 |
| Match: | |
| Description: | No description for 1qqeA was found. |
|
Region A: Residues: [275-436] |
1 11 21 31 41 51
| | | | | |
1 SDIWLENIRL HESDVHYCKT LVATAINFNP TSPLLWFKAI DLESTTVNKY RVVRKALQEI 60
61 PRDEGLWKLA VSFEADKAQV IKMLEKATQF IPQSMDLLTA YTNLQSYHNA KMTLNSFRKI 120
121 LPQEPEIWII STLLEERNNP DIPVDKLVSL LKEGLLELSK NG
|
| Detection Method: | |
| Confidence: | 14.34 |
| Match: | |
| Description: | No description for 1qqeA was found. |
|
Region A: Residues: [437-559] |
1 11 21 31 41 51
| | | | | |
1 YKATLSAWLK RAEALNDAPN SNLTCQAIVY AILEWLRESG EYESELNNVD QILEKMPHSK 60
61 VQIAVLKKLI QWDPCDTVLW SRLKMATESY HKIEELLAFF QELLFQTKNS DDIRANMREK 120
121 SPG
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [560-766] |
1 11 21 31 41 51
| | | | | |
1 LLMMYVSEYW KAQKGDTRQT LVLIDQIIDF APHNLDLRFF KIKLLGRSLQ LDELRDFFQQ 60
61 TFSSLEDFKI SGTERLYYKY VNFLRYQDLN EEAIKFLNER CLKSFPICHK FFLQLGQIYH 120
121 SMGNIEMSRE TYLSGTRLVP NCPLLWVSLS KIDEIDLKNP VRARSILDRG LLKNPDDVLF 180
181 YIAKIQMEIR LGNLDQAELL VTQALQK
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [767-899] |
1 11 21 31 41 51
| | | | | |
1 FPSNALLWVE QIKLFKHGNK SSLKKTIFQD ALRRTQNDHR VLLEIGVSFY AEAQYETSLK 60
61 WLERALKKCS RYGDTWVWLF RTYARLGKDT VDLYNMFDQC EPTYGPEWIA ASKNVKMQYC 120
121 TPREILLRLM NDK
|
| Detection Method: | |
| Confidence: | 35.30103 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
