YRC Public Data Repository - Protein Structure Prediction

Protein:	FAT1
Organism:	Saccharomyces cerevisiae
Length:	623 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAT1.

Description	E-value	Query Range	Subject Range
gi\|9715733 - gi\|9715733\|emb\|CAC01603.1\| peptide synthetase [Anabaena circinalis 90]	0.0	[2..622]	[1531..2142]
gi\|6563397 - gi\|6563397\|gb\|AAF15891.2\|AF204805_1 NosA [Nostoc sp. GSV224]	0.0	[2..622]	[1447..2070]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[3..622]	[1391..1985]
gi\|17131741, gi\|... - gi\|17230140\|ref\|NP_486688.1\| peptide synthetase [Nostoc sp. PCC 7120], gi\|17131741\|dbj\|BAB74347.1\| p... gi\|25294032 - pir\|\|AI2136 peptide synthetase [imported] - Nostoc sp. (strain PCC 7120)	0.0	[2..622]	[342..958]
TYCC_BREPA - Tyrocidine synthase 3 OS=Brevibacillus parabrevis GN=tycC PE=1 SV=1 gi\|2623773, gi\|7... - gi\|7522159\|pir\|\|T31076 tyrocidine synthetase 3 - Brevibacillus brevis, gi\|2623773\|gb\|AAC45930.1\| tyr...	0.0	[3..622]	[5539..6141]
gi\|27350362, gi\|... - gi\|27377219\|ref\|NP_768748.1\| peptide synthetase [Bradyrhizobium japonicum USDA 110], gi\|27350362\|dbj... gi\|12620806 - gi\|12620806\|gb\|AAG61082.1\|AF322013_201 ID930 [Bradyrhizobium japonicum]	0.0	[2..622]	[1238..1848]
gi\|6007555 - gi\|6007555\|gb\|AAF00962.1\| McyC [Microcystis aeruginosa PCC 7806] gi\|159029566, gi... - gi\|6007555\|gb\|AAF00962.1\|AF183408_10 McyC [Microcystis aeruginosa PCC 7806], gi\|159029566\|emb\|CAO902...	0.0	[3..622]	[362..959]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPIQVVVFA LSRIFLLLFR LIKLIITPIQ KSLGYLFGNY FDELDRKYRY KEDWYIIPYF  60
   61 LKSVFCYIID VRRHR

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [99-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPMAEKGEFQ LETF

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [254-524]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIYTSGTTGL PKSAIMSWRK SSVGCQVFGH VLHMTNESTV FTAMPLFHST AALLGACAIL  60
   61 SHGGCLALSH KFSASTFWKQ VYLTGATHIQ YVGEVCRYLL HTPISKYEKM HKVKVAYGNG 120
  121 LRPDIWQDFR KRFNIEVIGE FYAATEAPFA TTTFQKGDFG IGACRNYGTI IQWFLSFQQT 180
  181 LVRMDPNDDS VIYRNSKGFC EVAPVGEPGE MLMRIFFPKK PETSFQGYLG NAKETKSKVV 240
  241 RDVFRRGDAW YRCGDLLKAD EYGLWYFLDR M

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	192.08661
Match:	1ba3__
Description:	Luciferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [76-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQNWYLFIKQ VQQNGDHLAI SYT

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [113-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TYIETYNIVL RLSHILHFDY NVQAGDYVAI DCTNKPLFVF LWLSLWNIGA IPAFLNYNTK  60
   61 GTPLVHSLKI SNITQVFIDP DASNPIRESE EEIKNALPDV KLNYLEEQDL MHELLNSQSP 120
  121 EFLQQDNVRT PLGLTDFKPS M

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [525-623]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDTFRWKSEN VSTTEVEDQL TASNKEQYAQ VLVVGIKVPK YEGRAGFAVI KLTDNSLDIT  60
   61 AKTKLLNDSL SRLNLPSYAM PLFVKFVDEI KMTDNLIKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	192.08661
Match:	1ba3__
Description:	Luciferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits