| Protein: | CHS2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 963 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHS2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..963] | [1..963] |
|
|
0.0 | [60..961] | [2..943] |
|
|
0.0 | [60..933] | [2..918] |
|
|
0.0 | [60..933] | [2..912] |
|
|
0.0 | [54..933] | [3..886] |
|
|
0.0 | [11..933] | [5..919] |
|
|
0.0 | [25..933] | [3..897] |
|
|
0.0 | [39..943] | [4..904] |
|
Region A: Residues: [1-184] |
1 11 21 31 41 51
| | | | | |
1 MTRNPFMVEP SNGSPNRRGA SNLSKFYANA NSNSRWANPS EESLEDSYDQ SNVFQGLPAS 60
61 PSRAALRYSP DRRHRTQFYR DSAHNSPVAP NRYAANLQES PKRAGEAVIH LSEGSNLYPR 120
121 DNADLPVDPY HLSPQQQPSN NLFGSGRLYS QSSKYTMSTT STTAPSLAEA DDEKEKYLTS 180
181 TTSY
|
| Detection Method: |  |
| Confidence: | 11.82 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [185-286] |
1 11 21 31 41 51
| | | | | |
1 DDQSTIFSAD TFNETKFELN HPTRQQYVRR ANSESKRRMV SDLPPPSKKK ALLKLDNPIP 60
61 KGLLDTLPRR NSPEFTEMRY TACTVEPDDF LREGYTLRFA EM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [287-527] |
1 11 21 31 41 51
| | | | | |
1 NRECQIAICI TMYNEDKYSL ARTIHSIMKN VAHLCKREKS HVWGPNGWKK VSVILISDGR 60
61 AKVNQGSLDY LAALGVYQED MAKASVNGDP VKAHIFELTT QVSINADLDY VSKDIVPVQL 120
121 VFCLKEENKK KINSHRWLFN AFCPVLQPTV VTLVDVGTRL NNTAIYRLWK VFDMDSNVAG 180
181 AAGQIKTMKG KWGLKLFNPL VASQNFEYKI SNILDKPLES VFGYISVLPG ALSAYRYRAL 240
241 K
|
|
Region B: Residues: [578-603] |
1 11 21 31 41 51
| | | | | |
1 VLKYVKEATG ETDVPEDVSE FISQRR
|
| Detection Method: | |
| Confidence: | 11.34 |
| Match: | 1h7lA |
| Description: | Spore coat polysaccharide biosynthesis protein SpsA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [528-577] |
1 11 21 31 41 51
| | | | | |
1 NHEDGTGPLR SYFLGETQEG RDHDVFTANM YLAEDRILCW ELVAKRDAKW
|
|
Region B: Residues: [604-627] |
1 11 21 31 41 51
| | | | | |
1 RWLNGAMFAA IYAQLHFYQI WKTK
|
| Detection Method: | |
| Confidence: | 11.34 |
| Match: | 1h7lA |
| Description: | Spore coat polysaccharide biosynthesis protein SpsA |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [628-747] |
1 11 21 31 41 51
| | | | | |
1 HSVVRKFFLH VEFLYQFIQM LFSWFSIANF VLTFYYLAGS MNLVIKHGEA LFIFFKYLIF 60
61 CDLASLFIIS MGNRPQGAKH LFITSMVILS ICATYSLICG FVFAFKSLAS GTESHKIFVD 120
121
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [748-963] |
1 11 21 31 41 51
| | | | | |
1 IVISLLSTYG LYFFSSLMYL DPWHMFTSSI QYFLTLPAFT CTLQIFAFCN THDVSWGTKG 60
61 STQESKQLSK AIVVQGPDGK QIVETDWPQE VDKKFLEIKS RLKEPEFEES SGNEKQSKND 120
121 YYRDIRTRIV MIWMLSNLIL IMSIIQVFTP QDTDNGYLIF ILWSVAALAA FRVVGSMAFL 180
181 FMKYLRIIVS YRNKVEGSGS WEVSKLDLPN VFHKKG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
