| Protein: | COQ1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 473 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COQ1.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..473] | [1..473] |
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3.0E-83 | [37..432] | [20..365] |
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2.0E-81 | [42..432] | [2..354] |
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1.0E-80 | [32..432] | [20..368] |
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3.0E-78 | [22..431] | [18..379] |
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1.0E-77 | [37..432] | [20..367] |
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1.0E-76 | [32..431] | [18..362] |
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Region A: Residues: [1-101] |
1 11 21 31 41 51
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1 MFQRSGAAHH IKLISSRRCR FKSSFAVALN AASKLVTPKI LWNNPISLVS KEMNTLAKNI 60
61 VALIGSGHPV LNKVTSYYFE TEGKKVRPLL VLLLSRALSE I
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| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.580 | d.26.1 | FKBP-like |
| View | Download | 0.618 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.556 | a.74.1 | Cyclin-like |
| View | Download | 0.762 | a.158.1 | F-box domain |
| View | Download | 0.577 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.550 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.545 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.543 | a.118.1 | ARM repeat |
| View | Download | 0.540 | a.24.3 | Cytochromes |
| View | Download | 0.512 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.509 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.509 | a.4.1 | Homeodomain-like |
| View | Download | 0.493 | a.39.1 | EF-hand |
| View | Download | 0.486 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.482 | a.74.1 | Cyclin-like |
| View | Download | 0.482 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.476 | a.21.1 | HMG-box |
| View | Download | 0.465 | a.47.2 | t-snare proteins |
| View | Download | 0.452 | a.39.1 | EF-hand |
| View | Download | 0.447 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.434 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.417 | a.2.3 | Chaperone J-domain |
| View | Download | 0.415 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.412 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.410 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.406 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.400 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.386 | d.26.1 | FKBP-like |
| View | Download | 0.385 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.384 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.383 | a.118.8 | TPR-like |
| View | Download | 0.382 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.380 | a.134.1 | Fungal elicitin |
| View | Download | 0.379 | a.130.1 | Chorismate mutase II |
| View | Download | 0.372 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.371 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.367 | a.29.2 | Bromodomain |
| View | Download | 0.366 | c.55.4 | Translational machinery components |
| View | Download | 0.366 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.363 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.344 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.343 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.337 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.324 | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.321 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.319 | a.4.1 | Homeodomain-like |
| View | Download | 0.312 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.312 | d.195.1 | YopH tyrosine phosphatase N-terminal domain |
| View | Download | 0.311 | a.74.1 | Cyclin-like |
| View | Download | 0.308 | a.29.2 | Bromodomain |
| View | Download | 0.307 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.302 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.296 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.296 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.296 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.295 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.283 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.281 | a.28.1 | ACP-like |
| View | Download | 0.281 | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.281 | a.26.1 | 4-helical cytokines |
| View | Download | 0.272 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.269 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.266 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.259 | a.7.1 | Spectrin repeat |
| View | Download | 0.250 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.248 | a.1.1 | Globin-like |
| View | Download | 0.247 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.243 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.242 | a.77.1 | DEATH domain |
| View | Download | 0.240 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.236 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.235 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.235 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.235 | a.2.3 | Chaperone J-domain |
| View | Download | 0.234 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.232 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.229 | a.39.1 | EF-hand |
| View | Download | 0.227 | d.26.1 | FKBP-like |
| View | Download | 0.227 | a.39.1 | EF-hand |
| View | Download | 0.227 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.224 | a.7.1 | Spectrin repeat |
| View | Download | 0.223 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.219 | a.24.4 | Hemerythrin |
| View | Download | 0.212 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.211 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.209 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.209 | a.4.1 | Homeodomain-like |
| View | Download | 0.204 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.204 | a.4.1 | Homeodomain-like |
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Region A: Residues: [102-295] |
1 11 21 31 41 51
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1 PMTERNHLKI DKSDVPEDPI YSKPSQNQLF QRPASSISPL HILHGIKPLN PLTKGPEPLP 60
61 EETFDKQRGI LPKQRRLAEI VEMIHTASLL HDDVIDHSDT RRGRPSGNAA FTNKMAVLAG 120
121 DFLLGRATVS ISRLHNPEVV ELMSNSIANL VEGEFMQLKN TSIDADIDTI ENGHKLLPVP 180
181 SKKLEVKEHD FRVP
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Region B: Residues: [321-346] |
1 11 21 31 41 51
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1 YLKTAALISK SCRCAAILSG ASPAVI
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| Detection Method: | |
| Confidence: | 67.39794 |
| Match: | 1ubx__ |
| Description: | Farnesyl diphosphate synthase |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [296-320] |
1 11 21 31 41 51
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1 SRQQGLQLSH DQIIETAFEY YIHKT
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Region B: Residues: [347-473] |
1 11 21 31 41 51
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1 DECYDFGRNL GICFQLVDDM LDFTVSGKDL GKPSGADLKL GIATAPVLFA WKEDPSLGPL 60
61 ISRNFSERGD VEKTIDSVRL HNGIAKTKIL AEEYRDKALQ NLRDSLPESD ARSALEFLTN 120
121 SILTRRK
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| Detection Method: | |
| Confidence: | 67.39794 |
| Match: | 1ubx__ |
| Description: | Farnesyl diphosphate synthase |
| Matching Structure (courtesy of the PDB): |
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