YRC Public Data Repository - Protein Structure Prediction

Protein:	BRN1
Organism:	Saccharomyces cerevisiae
Length:	728 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BRN1.

Description	E-value	Query Range	Subject Range
gi\|559715 - gi\|559715\|dbj\|BAA07556.1\| HCAP-H [Homo sapiens]	0.0	[1..720]	[113..747]
CND2_SCHPO - Condensin complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cnd2 PE=1 SV=1 cnd2 - condensin subunit Cnd2	0.0	[1..727]	[67..737]
gi\|15225709, gi\|... - pir\|\|T02558 hypothetical protein At2g32590 [imported] - Arabidopsis thaliana, gi\|3298547\|gb\|AAC2594...	0.0	[1..717]	[75..702]
gi\|18204543, gi\|... - gi\|21450193\|ref\|NP_659067.1\| non-SMC condensin I complex, subunit H [Mus musculus], gi\|19263784\|gb\|A...	0.0	[1..720]	[94..723]
CND2_XENLA - Condensin complex subunit 2 OS=Xenopus laevis GN=ncaph PE=1 SV=1	0.0	[4..720]	[100..699]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[1..630]	[6..686]
gi\|220948058 - gi\|220948058\|gb\|ACL86572.1\| barr-PA [synthetic construct] barr-PB, FBpp031... - The gene barren is referred to in FlyBase by the symbol Dmel\barr (CG10726, FBgn0014127). It is a pr...	2.0E-49	[7..718]	[65..732]
gi\|19074048, gi\|... - gi\|19074048\|ref\|NP_584654.1\| hypothetical protein ECU02_1290 [Encephalitozoon cuniculi GB-M1], gi\|19... gi\|19074048 - gi\|19074048\|ref\|NP_584654.1\| hypothetical protein ECU02_1290 [Encephalitozoon cuniculi GB-M1]	3.0E-23	[7..86]	[8..86]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMANFEEWIK MATDNKINSR NSWNFALIDY FYDLDVLKDG ENNINFQKAS ATLDGCIKIY  60
   61 SSRVDSVTTE TGKLLSGLAQ RKTNGASNGD DSNGGNGEGL GGDSDEANIE IDPLTGMP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [119-728]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISNDPDVNNT RRRVYNRVLE TTLVEFETIK MKELDQELII DPLFKKALVD FDEGGAKSLL  60
   61 LNTLNIDNTA RVIFDASIKD TQNVGQGKLQ RKEEELIERD SLVDDENEPS QSLISTRNDS 120
  121 TVNDSVISAP SMEDEILSLG MDFIKFDQIA VCEISGSIEQ LRNVVEDINQ AKDFIENVNN 180
  181 RFDNFLTEEE LQAAVPDNAE DDSDGFDMGM QQELCYPDEN HDNTSHDEQD DDNVNSTTGS 240
  241 IFEKDLMAYF DENLNRNWRG REHWKVRNFK KANLVNKESD LLEETRTTIG DTTDKNTTDD 300
  301 KSMDTKKKHK QKKVLEIDFF KTDDSFEDKV FASKGRTKID MPIKNRKNDT HYLLPDDFHF 360
  361 STDRITRLFI KPAQKMSLFS HRKHTRGDVS SGLFEKSTVS ANHSNNDIPT IADEHFWADN 420
  421 YERKEQEEKE KEQSKEVGDV VGGALDNPFE DDMDGVDFNQ AFEGTDDNEE ASVKLDLQDD 480
  481 EDHKFPIREN KVTYSRVSKK VDVRRLKKNV WRSINNLIQE HDSRKNREQS SNDSETHTED 540
  541 ESTKELKFSD IIQGISKMYS DDTLKDISTS FCFICLLHLA NEHGLQITHT ENYNDLIVNY 600
  601 EDLATTQAAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits