YRC Public Data Repository - Protein Structure Prediction

Protein:	ALG3
Organism:	Saccharomyces cerevisiae
Length:	458 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALG3.

Description	E-value	Query Range	Subject Range
gi\|984725 - gi\|984725\|gb\|AAA75352.1\| ORF 1 [Saccharomyces cerevisiae]	513.0	[0..47]	[406..1]
CE32691 - status:Partially_confirmed UniProt:Q9NAP5 protein_id:CAB70171.2	509.0	[0..46]	[435..23]
gi\|133778113, gi... - gi\|76607389\|ref\|XP_871059.1\| PREDICTED: similar to Not56-like protein isoform 1 [Bos taurus], gi\|134...	482.0	[0..26]	[433..29]
gi\|57109914 - gi\|57109914\|ref\|XP_535823.1\| PREDICTED: similar to Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannos...	473.0	[0..26]	[433..29]
ALG3 - asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) gi\|123992969, gi... - gi\|123999893\|gb\|ABM87455.1\| asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mann...	468.0	[0..26]	[433..29]
gi\|114590804 - gi\|114590804\|ref\|XP_516912.2\| PREDICTED: asparagine-linked glycosylation 3 isoform 4 [Pan troglodyte...	467.0	[0..26]	[433..29]
gi\|157753044 - gi\|157753044\|ref\|XP_001680234.1\| Hypothetical protein CBG20997 [Caenorhabditis briggsae AF16] gi\|187023237, gi... - gi\|39591480\|emb\|CAE73534.1\| Hypothetical protein CBG20997 [Caenorhabditis briggsae], gi\|187023237\|em...	452.0	[0..46]	[436..23]
gi\|79324943 - gi\|79324943\|ref\|NP_001031556.1\| ALG3; alpha-1,3-mannosyltransferase/ catalytic [Arabidopsis thaliana...	449.0	[0..30]	[433..20]
gi\|63100961, gi\|... - gi\|66472352\|ref\|NP_001018532.1\| alpha-1,3-mannosyltransferase ALG3 [Danio rerio], gi\|63100961\|gb\|AAH...	448.0	[0..10]	[433..7]

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Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGEQSPQGE KSLQRKQFVR PPLDLWQDLK DGVRYVIFDC RANLIVMPLL ILFESMLCKI  60
   61 IIKKVAYTEI DYKAYMEQIE MIQLDGMLDY SQVSGGTGPL VYPAGHVLIY KMMYWLTEGM 120
  121 DHVERGQVFF RYLYLLTLAL QMACYYLLHL PPWCVVLACL SKRLHSIYVL RLFNDCFTTL 180
  181 FMVVTVLGAI VASRCHQRPK LKKSLALVIS ATYSMAVSIK MNALLYFPAM MISLFILNDA 240
  241 NVILTLLDLV AMIAWQVAVA VPFLRSFPQQ YLHCAFNFGR KFMYQWSINW QMMDEEAFND 300
  301 KRFHLALLIS HLIALTTLFV TRYPRILPDL WSSLCHPLRK NAVLNA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [347-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPAKTIPFVL IASNFIGVLF SRSLHYQFLS WYHWTLPILI FWSGMPFFVG PIWYVLHEWC  60
   61 WNSYPPNSQA STLLLALNTV LLLLLALTQL SGSVALAKSH LRTTSSMEKK LN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.973	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits