YRC Public Data Repository - Protein Structure Prediction

Protein:	PET112
Organism:	Saccharomyces cerevisiae
Length:	541 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PET112.

Description	E-value	Query Range	Subject Range
PET112 - Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; ... GATB_YEAST - Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	0.0	[1..541]	[1..541]
GATB_GEOSE - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacillus stearothermophilus GN=gatB...	0.0	[25..539]	[1..475]
GATB_BACHD - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Bacillus halodurans (strain ATCC BAA-1... GATB_BACHD - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Bacillus halodurans GN=gatB PE=3 SV=1	0.0	[25..539]	[1..475]
gi\|7429249 - gi\|7429249\|pir\|\|S75850 pet112 protein - Synechocystis sp. (strain PCC 6803) gi\|16330901, gi\|... - gi\|1653395\|dbj\|BAA18309.1\| PET112 protein [Synechocystis sp. PCC 6803], gi\|16330901\|ref\|NP_441629.1\|...	0.0	[20..537]	[27..516]
gi\|224503320 - gi\|224503320\|ref\|ZP_03671627.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Listeria monocyto... GATB_LISMO - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Listeria monocytogenes serovar 1/2a (s... GATB_LISMO - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Listeria monocytogenes GN=gatB PE=3 SV... gi\|133729802, gi... - gi\|254829493\|ref\|ZP_05234180.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Listeria monocyto... gi\|153198073, gi... - gi\|254832499\|ref\|ZP_05237154.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Listeria monocyto...	0.0	[25..539]	[1..475]
GATB_LISIN - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Listeria innocua serovar 6a (strain CL... GATB_LISIN - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Listeria innocua GN=gatB PE=3 SV=1	0.0	[25..539]	[1..475]
GATB_BACSU - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Bacillus subtilis GN=gatB PE=1 SV=2 GATB_BACSU - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Bacillus subtilis (strain 168) GN=gatB...	0.0	[25..539]	[1..475]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[25..539]	[1..475]
GATB_BRUMB - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Brucella melitensis biotype 2 (strain ... gi\|225617394, gi... - gi\|225627389\|ref\|ZP_03785426.1\| glutamyl-tRNA(Gln) amidotransferase, B subunit [Brucella ceti str. C... gi\|254689150 - gi\|254689150\|ref\|ZP_05152404.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Brucella abortus ... gi\|237815331, gi... - gi\|237815331\|ref\|ZP_04594329.1\| glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B sub... gi\|254697284 - gi\|254697284\|ref\|ZP_05159112.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Brucella abortus ... gi\|254693633 - gi\|254693633\|ref\|ZP_05155461.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Brucella abortus ... gi\|254706891 - gi\|254706891\|ref\|ZP_05168719.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Brucella pinniped... gi\|254704208 - gi\|254704208\|ref\|ZP_05166036.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Brucella suis bv.... gi\|254730183 - gi\|254730183\|ref\|ZP_05188761.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Brucella abortus ... gi\|254710002 - gi\|254710002\|ref\|ZP_05171813.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Brucella pinniped... GATB_BRUA2 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Brucella abortus (strain 2308) GN=gatB... GATB_BRUAB - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Brucella abortus biovar 1 (strain 9-94... GATB_BRUAB - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Brucella abortus GN=gatB PE=3 SV=1 GATB_BRUSU - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Brucella suis biovar 1 (strain 1330) G... GATB_BRUSU - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Brucella suis GN=gatB PE=3 SV=1 GATB_BRUME - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Brucella melitensis biotype 1 (strain ... GATB_BRUA1 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Brucella abortus (strain S19) GN=gatB ... GATB_BRUME - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Brucella melitensis GN=gatB PE=3 SV=1 GATB_BRUC2 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Brucella canis (strain ATCC 23365 / NC...	0.0	[25..540]	[20..499]

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Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLARFYSL ARTKAIHSHG APFRPEYALK CGLEIHTQLN TKNKLFSQST NSATSLVDAP  60
   61 NHHTSYYDIA LPGTQPVLNL EAILFAMKLS LALGSQVNSI SQFDRKHYFY GDQPQGYQLT 120
  121 QHYRPFARGG KINLSKELDD IDESAKEIGI LQLQIEQDTG KSHYTETDKD VITLVDLNRS 180
  181 NVPLIELVTK PDFSDIKQVR AFIKKYQNLV RHLHISSGDL ETGAMRVDVN LSINEYARVE 240
  241 LKNLPNTSSI INAIKYEYQR QVELISVGDT S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	135.229148
Match:	PF02934
Description:	PET112 family, N terminal region

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.94703732461209	bayes_pls_golite062009
ligase activity	5.28014676041088	bayes_pls_golite062009
catalytic activity	1.08973967683802	bayes_pls_golite062009
binding	1.0468360119595	bayes_pls_golite062009
ammonia ligase activity	0.978763138251862	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.789800177023595	bayes_pls_golite062009
acid-ammonia (or amide) ligase activity	0.632807059205458	bayes_pls_golite062009
nucleic acid binding	0.545649763280687	bayes_pls_golite062009
protein binding	0.440356087696859	bayes_pls_golite062009
kinase activity	0.21984983699175	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.132389278472779	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [272-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLMEPETRGW TGSSTVKLRS KETTIDYRYM PDPELPYINL APDVISGVRG LMPQLPDDIM  60
   61 RILMKKPYQL SLKDAKILTY NSNQNDMYNH EA

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.06
Match:	1m9iA
Description:	Annexin VI
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [364-541]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRSYYLDTFR EFSKLAGERS NAKLPTNWII HEFLGDLNKL QIPLAKAKEI LAPPVFAQFL  60
   61 KLLHEEVISA TSGKMLLFHI LENFEQSNCQ DLSIPDFSKL IEKFELHAIN QVDPQELMDL 120
  121 CNDVIAQHTD DTFIRNLVTG KKKSSLKFLI GQGMRRSQGR IKANEFEKKF KEILNIQW

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.06
Match:	1m9iA
Description:	Annexin VI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: