| Protein: | YEL1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 687 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEL1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..687] | [1..687] |
|
|
7.0E-75 | [43..333] | [585..857] |
|
|
9.0E-75 | [32..340] | [627..951] |
|
|
4.0E-74 | [32..340] | [627..951] |
|
|
3.0E-66 | [9..354] | [644..956] |
|
|
5.0E-66 | [9..354] | [644..956] |
|
Region A: Residues: [1-64] |
1 11 21 31 41 51
| | | | | |
1 MCASLNEVKK NDTYGVSQKG YNDNFSESEG VLHGSKSMPT SMKNMLQSPT MVNMCDILQN 60
61 KEAA
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.754 | a.3.1 | Cytochrome c |
| View | Download | 0.491 | a.4.1 | Homeodomain-like |
| View | Download | 0.408 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.450 | a.64.1 | Saposin |
| View | Download | 0.377 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.370 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.350 | a.4.1 | Homeodomain-like |
| View | Download | 0.317 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.274 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.266 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.259 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.255 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.248 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.234 | a.3.1 | Cytochrome c |
| View | Download | 0.230 | a.3.1 | Cytochrome c |
| View | Download | 0.223 | a.109.1 | Class II MHC-associated invariant chain ectoplasmic trimerization domain |
| View | Download | 0.219 | a.36.1 | Signal peptide-binding domain |
| Term | Confidence | Notes |
| ARF guanyl-nucleotide exchange factor activity | 2.15082391847379 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.95409587538646 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 1.91412378174324 | bayes_pls_golite062009 |
| GTPase regulator activity | 1.88151514457186 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 1.71252280948806 | bayes_pls_golite062009 |
| small GTPase regulator activity | 1.48167884428561 | bayes_pls_golite062009 |
| protein binding | 1.10832780583804 | bayes_pls_golite062009 |
| binding | 0.820589177796715 | bayes_pls_golite062009 |
|
Region A: Residues: [65-127] |
1 11 21 31 41 51
| | | | | |
1 NDEKPVIPTT DTATAGTGTE DISSTQSEET DQNSHLIASE ILEGTFKDVS YKEYANFLGN 60
61 DNN
|
| Detection Method: | |
| Confidence: | 108.9897 |
| Match: | 1bc9__ |
| Description: | Cytohesin-1/b2-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [128-289] |
1 11 21 31 41 51
| | | | | |
1 NQVLTEFVKL LSPLPSSLLE TLFNLSKSIY FIAEAQNIDR ILECLSIEWI ACHPNTHWKS 60
61 GYKSCHIVLF SLLILNSDLH NNFQVDHKKI KFSMVAFINN TLRALREENE YEELKIYSRE 120
121 HLIIEELSEY YKTLNETPLP LCTESRTSIN ISDNQSSLKR FS
|
| Detection Method: | |
| Confidence: | 108.9897 |
| Match: | 1bc9__ |
| Description: | Cytohesin-1/b2-1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 2.35604024172114 | bayes_pls_golite062009 |
| binding | 2.07235282758468 | bayes_pls_golite062009 |
|
Region A: Residues: [290-510] |
1 11 21 31 41 51
| | | | | |
1 TLGSREFSTS NLRSVNSNST TLYSRDGQVS VREMSAKSNK NFHNNHPMDA LYLKESFDDG 60
61 LITENGSSWF MDDLILISKK SLPRKYSKRD KDQVAAPKMT SKRNKSFFGW LKPSKTTTLI 120
121 EHTSRRTSLS YLNKDSEWER VKIQVKEGRI FIFKIKPDVK DIIQSSETDS ATIDYFKDIS 180
181 SSYFAYSLLE AEAHVVQDNI IIGSGAMKSN VCNKNTKRKS G
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [511-687] |
1 11 21 31 41 51
| | | | | |
1 NFTVSFPENI NGPKLVLEFQ TRSVEEAHKF MDCINFWAGR ISPVPLTQFE AVSNAEYGWS 60
61 DKILTEHASL NLKNIVVSEW KPLLGLELLY EDAKDVEMVE LKERLKELMN FTRQLGIWID 120
121 KHNEIKDKLV EIWSFDDNYF EAVMNNWNSR YLYMNNQYKK RLSYLKALQK AMGSVQF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
