YRC Public Data Repository - Protein Structure Prediction

Protein:	PSY4
Organism:	Saccharomyces cerevisiae
Length:	441 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSY4.

Description	E-value	Query Range	Subject Range
PSY4 - Putative regulatory subunit of an evolutionarily conserved protein phosphatase; localization is cell... PP4R2_YEAST - Serine/threonine-protein phosphatase 4 regulatory subunit 2 OS=Saccharomyces cerevisiae (strain ATCC...	0.0	[1..441]	[1..441]
GERIA_BACCE - Spore germination protein GerIA OS=Bacillus cereus GN=gerIA PE=3 SV=1 gi\|229193019, gi... - gi\|229193019\|ref\|ZP_04319975.1\| Spore germination protein gerIA [Bacillus cereus ATCC 10876], gi\|228...	1.0E-76	[135..435]	[18..295]
SPCC737.08 - midasin MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1	2.0E-71	[118..414]	[3955..4205]
gi\|9759485, gi\|1... - gi\|9759485\|dbj\|BAB10490.1\| kinesin heavy chain-like protein [Arabidopsis thaliana], gi\|15238979\|ref\|...	8.0E-55	[134..380]	[502..752]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-53	[141..362]	[521..744]
gi\|14090511 - gi\|14090511\|gb\|AAK53539.1\| DOMINO B [Drosophila melanogaster]	4.0E-41	[134..308]	[663..851]
gi\|15212037 - gi\|15212037\|emb\|CAC51118.1\| putative bifunctional autolysin [Staphylococcus xylosus]	3.0E-6	[134..401]	[136..392]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTMLDDVD NNMMGIKSIS LYELLSDVVK QGDKTRLVTA GPEQVLPDLI RHITETIPFD  60
   61 LFINLKNEMN DARNLVTRLN WLGKFLNDNF LQNHT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPFTILRICE LCYDPFKYYK INELEKFVNA LEKCCMVTSS WQVFDKTHGE KQEDDKEKDI  60
   61 NFIKNQEDVS LMKIPWMTEN NTRELAPFIR EIDSIMSVN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	12.28
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [195-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGYDDEDEEE GFFDGDEDRE MGNKSKRNVL LKDENFMVEE YYEDDCGIND DNSDNKGQNC  60
   61 QSDVTKNNSD DEDDDDNDD

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	12.28
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #4

Region A:
Residues: [274-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYREDGADED DEDDDHMGST DDDEDDDEDR QAGESTKVQN FDKKNETPRK RKPTDLDNFE  60
   61 YDESPSFTNM

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	12.28
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #5

Region A:
Residues: [344-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLTTPKKYKH TATGRFSIIE SPSSSLLNAM DGSNEISSSQ EEEKEDAHEN HEGRSEGLLP  60
   61 GDELVSPSMS SSQEDKMVAI AGITYRENIS SPLGKKSR

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	12.28
Match:	1l8mA
Description:	No description for 1l8mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits