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View Structure Prediction Details

Protein: PSY4
Organism: Saccharomyces cerevisiae
Length: 441 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSY4.

Description E-value Query
Range		 Subject
Range
PSY4 - Putative regulatory subunit of an evolutionarily conserved protein phosphatase; localization is cell...
PP4R2_YEAST - Serine/threonine-protein phosphatase 4 regulatory subunit 2 OS=Saccharomyces cerevisiae (strain ATCC...
 0.0 [1..441] [1..441]
GERIA_BACCE - Spore germination protein GerIA OS=Bacillus cereus GN=gerIA PE=3 SV=1
gi|229193019, gi... - gi|229193019|ref|ZP_04319975.1| Spore germination protein gerIA [Bacillus cereus ATCC 10876], gi|228...
 1.0E-76 [135..435] [18..295]
SPCC737.08 - midasin
MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1
 2.0E-71 [118..414] [3955..4205]
gi|9759485, gi|1... - gi|9759485|dbj|BAB10490.1| kinesin heavy chain-like protein [Arabidopsis thaliana], gi|15238979|ref|...
 8.0E-55 [134..380] [502..752]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 2.0E-53 [141..362] [521..744]
gi|14090511 - gi|14090511|gb|AAK53539.1| DOMINO B [Drosophila melanogaster]
 4.0E-41 [134..308] [663..851]
gi|15212037 - gi|15212037|emb|CAC51118.1| putative bifunctional autolysin [Staphylococcus xylosus]
 3.0E-6 [134..401] [136..392]

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Predicted Domain #1
Region A:
Residues: [1-95] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTMLDDVD NNMMGIKSIS LYELLSDVVK QGDKTRLVTA GPEQVLPDLI RHITETIPFD  60
   61 LFINLKNEMN DARNLVTRLN WLGKFLNDNF LQNHT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score		 SCOP
Match		 SCOP Description
View Download 0.740 d.79.3 L30e-like
View Download 0.688 a.40.1 Calponin-homology domain, CH-domain
View Download 0.750 c.23.4 Succinyl-CoA synthetase domains
View Download 0.718 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.616 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.601 c.44.2 Enzyme IIB-cellobiose
View Download 0.564 d.68.3 SirA-like
View Download 0.544 e.37.1 Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains
View Download 0.528 c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.474 c.115.1 Hypothetical protein MTH777 (MT0777)
View Download 0.468 c.3.1 FAD/NAD(P)-binding domain
View Download 0.460 a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain
View Download 0.401 a.24.7 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View Download 0.400 c.23.1 CheY-like
View Download 0.389 c.13.2 Anti-sigma factor antagonist SpoIIaa
View Download 0.388 c.23.12 Formate/glycerate dehydrogenase catalytic domain-like
View Download 0.385 c.51.3 B12-dependend dehydatases associated subunit
View Download 0.384 c.23.6 Cobalamin (vitamin B12)-binding domain
View Download 0.372 a.40.1 Calponin-homology domain, CH-domain
View Download 0.360 c.1.11 Enolase C-terminal domain-like
View Download 0.359 a.35.1 lambda repressor-like DNA-binding domains
View Download 0.357 c.47.1 Thioredoxin-like
View Download 0.355 a.39.1 EF-hand
View Download 0.352 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.338 c.20.1 Initiation factor IF2/eIF5b, domain 3
View Download 0.327 a.28.1 ACP-like
View Download 0.326 d.50.1 dsRNA-binding domain-like
View Download 0.321 a.39.1 EF-hand
View Download 0.317 c.23.5 Flavoproteins
View Download 0.301 d.68.7 R3H domain
View Download 0.300 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.295 d.68.6 DNA-binding protein Sso10b (AlbA)
View Download 0.294 a.7.6 Ribosomal protein S20
View Download 0.294 c.23.1 CheY-like
View Download 0.292 a.28.3 Retrovirus capsid protein C-terminal domain
View Download 0.286 a.28.2 Colicin E immunity proteins
View Download 0.285 c.55.4 Translational machinery components
View Download 0.284 a.28.3 Retrovirus capsid protein C-terminal domain
View Download 0.280 c.23.6 Cobalamin (vitamin B12)-binding domain
View Download 0.275 d.8.1 Urease, gamma-subunit
View Download 0.272 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.271 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.257 a.133.1 Phospholipase A2, PLA2
View Download 0.255 c.97.1 Cytidine deaminase-like
View Download 0.250 c.47.1 Thioredoxin-like
View Download 0.248 a.77.1 DEATH domain
View Download 0.248 a.68.1 Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
View Download 0.245 a.39.1 EF-hand
View Download 0.242 c.47.2 RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View Download 0.241 a.24.16 Nucleotidyltransferase substrate binding subunit/domain
View Download 0.239 d.92.2 beta-N-acetylhexosaminidase-like domain
View Download 0.235 c.1.6 PLP-binding barrel
View Download 0.235 c.1.2 Ribulose-phoshate binding barrel
View Download 0.234 d.68.5 C-terminal domain of ProRS
View Download 0.234 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.234 a.118.11 Cytochrome c oxidase subunit E
View Download 0.230 c.45.1 (Phosphotyrosine protein) phosphatases II
View Download 0.227 d.95.2 Homing endonucleases
View Download 0.227 c.16.1 Lumazine synthase
View Download 0.226 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.223 a.28.1 ACP-like
View Download 0.219 c.23.4 Succinyl-CoA synthetase domains
View Download 0.218 a.77.1 DEATH domain
View Download 0.215 d.53.1 Ribosomal protein S3 C-terminal domain
View Download 0.215 a.74.1 Cyclin-like
View Download 0.212 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.210 a.39.1 EF-hand
View Download 0.202 c.26.1 Nucleotidylyl transferase
View Download 0.202 a.39.1 EF-hand
View Download 0.201 a.28.3 Retrovirus capsid protein C-terminal domain
View Download 0.200 c.23.12 Formate/glycerate dehydrogenase catalytic domain-like

Predicted Domain #2
Region A:
Residues: [96-194] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPFTILRICE LCYDPFKYYK INELEKFVNA LEKCCMVTSS WQVFDKTHGE KQEDDKEKDI  60
   61 NFIKNQEDVS LMKIPWMTEN NTRELAPFIR EIDSIMSVN

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 12.28
Match: 1l8mA
Description: No description for 1l8mA was found.

Predicted Domain #3
Region A:
Residues: [195-273] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGYDDEDEEE GFFDGDEDRE MGNKSKRNVL LKDENFMVEE YYEDDCGIND DNSDNKGQNC  60
   61 QSDVTKNNSD DEDDDDNDD

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 12.28
Match: 1l8mA
Description: No description for 1l8mA was found.

Predicted Domain #4
Region A:
Residues: [274-343] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYREDGADED DEDDDHMGST DDDEDDDEDR QAGESTKVQN FDKKNETPRK RKPTDLDNFE  60
   61 YDESPSFTNM

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 12.28
Match: 1l8mA
Description: No description for 1l8mA was found.

Predicted Domain #5
Region A:
Residues: [344-441] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLTTPKKYKH TATGRFSIIE SPSSSLLNAM DGSNEISSSQ EEEKEDAHEN HEGRSEGLLP  60
   61 GDELVSPSMS SSQEDKMVAI AGITYRENIS SPLGKKSR

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 12.28
Match: 1l8mA
Description: No description for 1l8mA was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle