| Protein: | STU1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1513 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STU1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1513] | [1..1513] |
|
|
0.0 | [278..795] | [35..519] |
|
|
0.0 | [294..792] | [63..554] |
|
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1.0E-87 | [297..733] | [288..746] |
|
Region A: Residues: [1-216] |
1 11 21 31 41 51
| | | | | |
1 MSSFNNETNN NSNTNTHPDD SFPLYTVFKD ESVPIEEKMA LLTRFKGHVK KELVNESSIQ 60
61 AYFAALLFIS GHYAYRSYPR LIFLSHSSLC YLIKRVAMQS PVQFNDTLVE QLLNHLIFEL 120
121 PNEKKFWLAS IKAIEAIYLV NPSKIQAILA NFLRRPSENQ NGDYLNRIKS TLLTIDELIQ 180
181 INEKNNSNHL QLLRFFMLSF TNLLNNNLNE HANDDN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| cytoskeletal protein binding | 2.57708254106901 | bayes_pls_golite062009 |
| binding | 2.38363524631144 | bayes_pls_golite062009 |
| protein binding | 1.81870125631028 | bayes_pls_golite062009 |
| actin binding | 1.74253257307802 | bayes_pls_golite062009 |
|
Region A: Residues: [217-459] |
1 11 21 31 41 51
| | | | | |
1 NNVIIELIFD IMYKYLKMDD ENSQDLIDGF INDLEVEKFK QKFISLAKSQ DQHGSQEDKS 60
61 TLFDEEYEFQ LLLAEAKLPQ LSNNLSSKDP AMKKNYESLN QLQQDLENLL APFQSVKETE 120
121 QNWKLRQSNI IELDNIISGN IPKDNPEEFV TVIKEVQLIE LISRATSSLR TTLSLTALLF 180
181 LKRLIHILND QLPLSILDQI FVIFKNLLSS TKKISSQTAF HCLITLIIDI NHFHNKLFQL 240
241 SFL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [460-519] |
1 11 21 31 41 51
| | | | | |
1 LINEKTVTPR FCSAILLRSF LIKFNDSNLS LNNSNTTSPT SKLENNIIYI EEWLKKGISD 60
61
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.593 | a.4.1 | Homeodomain-like |
| View | Download | 0.464 | a.64.1 | Saposin |
| View | Download | 0.480 | a.112.1 | Description not found. |
| View | Download | 0.417 | g.1.1 | Insulin-like |
| View | Download | 0.408 | d.37.1 | CBS-domain |
| View | Download | 0.407 | a.4.1 | Homeodomain-like |
| View | Download | 0.399 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.395 | c.47.1 | Thioredoxin-like |
| View | Download | 0.387 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.361 | a.4.1 | Homeodomain-like |
| View | Download | 0.354 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.341 | d.68.6 | DNA-binding protein Sso10b (AlbA) |
| View | Download | 0.341 | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.333 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.329 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.328 | a.4.1 | Homeodomain-like |
| View | Download | 0.325 | d.10.1 | DNA-binding domain |
| View | Download | 0.323 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.322 | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.321 | a.159.2 | FF domain |
| View | Download | 0.321 | a.4.1 | Homeodomain-like |
| View | Download | 0.319 | d.58.17 | Metal-binding domain |
| View | Download | 0.319 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.306 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.303 | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
| View | Download | 0.299 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.296 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.294 | a.77.1 | DEATH domain |
| View | Download | 0.274 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.265 | d.58.17 | Metal-binding domain |
| View | Download | 0.255 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.253 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.253 | a.140.1 | LEM domain |
| View | Download | 0.248 | d.58.17 | Metal-binding domain |
| View | Download | 0.229 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.226 | a.74.1 | Cyclin-like |
| View | Download | 0.225 | a.140.1 | LEM domain |
| View | Download | 0.216 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.214 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.214 | f.30.1 | Photosystem I reaction center subunit X, PsaK |
| View | Download | 0.206 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.202 | a.5.2 | UBA-like |
| View | Download | 0.201 | a.126.1 | Serum albumin-like |
|
Region A: Residues: [520-881] |
1 11 21 31 41 51
| | | | | |
1 SQTTVREAMR LTFWYFYKCY PTNAKRLLSS SFSPQLKKAT ELAIPAHLNI NYQVSRVSST 60
61 ASASSATSRL YSHSSNNSSR KTSLLEQKRN YPSYAQPTQS SSTSLLNAPA VTAGGSVIAS 120
121 KLSNKLKTNL RSTSEYSSKE NEKRARHHDS MNSVSNSNTK DNNNVTKRKV SAPPSSTAAT 180
181 KVSENYTNFD DFPSNQIDLT DELSNSYSNP LIKKYMDKND VSMSSSPISL KGSNKLGEYE 240
241 TLYKKFNDAS FPAQIKDALQ YLQKELLLTS QQSSSAPKFE FPMIMKKLRQ IMIKSPNDFK 300
301 PFLSIEKFTN GVPLNYLIEL YSINSFDYAE ILKNRMNPEK PYELTNLIIT IADLFNFLNA 360
361 NN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [882-1513] |
1 11 21 31 41 51
| | | | | |
1 CPNDFKLYYM KYKTTFFNYN FKLLLEIFRN LNIKHDNTLR SGTNDLMPKI SMILFQIYGK 60
61 EFDYTCYFNL IFEIYKFDNN RFNKLLADFD IVSTKMKICH ELEKKDANFK VEDIISRESS 120
121 VSFTPIDNKK SEGDEESDDA VDENDVKKCM EMTMINPFKN LETDKTLELK NNVGKRTSST 180
181 DSVVIHDDND KDKKLSEMTK IVSVYQLDQP NPAKEEDDID MENSQKSDLN LSEIFQNSGE 240
241 NTERKLKDDN EPTVKFSTDP PKIINEPEKL IGNGNENEKP DLETMSPIKI NGDENMGQKQ 300
301 RITVKRERDV ALTEQDINSK KMKLVNNKKS EKMHLLIMDN FPRDSLTVYE ISHLLMVDSN 360
361 GNTLMDFDVY FNHMSKAINR IKSGSFTMKH INYLIEPLIT CFQNQKMTDW LTNENGFDEL 420
421 LDVAIMLLKS TDDTPSIPSK ISSKSIILVH CLLVWKKFLN TLSENADDDG VSVRMCFEEV 480
481 WEQILLMLNK FSDYGNEIYK LAQEFRDSLM LSHFFKKHSA TRILSMLVTE IQPDTAGVKE 540
541 TFLIETLWKM LQSPTICQQF KKSNISEIIQ TMSYFIMGTD NTSWNFTSAV VLARCLRVLQ 600
601 TTPDYTEQET ERLFDCLPKN VFKMIMFIAS NE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1318-1513] |
1 11 21 31 41 51
| | | | | |
1 IPSKISSKSI ILVHCLLVWK KFLNTLSENA DDDGVSVRMC FEEVWEQILL MLNKFSDYGN 60
61 EIYKLAQEFR DSLMLSHFFK KHSATRILSM LVTEIQPDTA GVKETFLIET LWKMLQSPTI 120
121 CQQFKKSNIS EIIQTMSYFI MGTDNTSWNF TSAVVLARCL RVLQTTPDYT EQETERLFDC 180
181 LPKNVFKMIM FIASNE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
