YRC Public Data Repository - Protein Structure Prediction

Protein:	RRN10
Organism:	Saccharomyces cerevisiae
Length:	145 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRN10.

Description	E-value	Query Range	Subject Range
gi\|49527623 - gi\|49527623\|emb\|CAG61272.1\| unnamed protein product [Candida glabrata] gi\|49527623, gi\|... - gi\|50291757\|ref\|XP_448311.1\| unnamed protein product [Candida glabrata], gi\|49527623\|emb\|CAG61272.1\|...	159.0	[0..1]	[145..1]
gi\|44984708 - gi\|44984708\|gb\|AAS53551.1\| AFR180Cp [Ashbya gossypii ATCC 10895] gi\|44984708, gi\|... - gi\|45198698\|ref\|NP_985727.1\| AFR180Cp [Ashbya gossypii ATCC 10895], gi\|44984708\|gb\|AAS53551.1\| AFR18...	135.0	[0..1]	[145..1]
gi\|50311245, gi\|... - gi\|50311245\|ref\|XP_455647.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644783\|emb\|CAG9835... gi\|49644783 - gi\|49644783\|emb\|CAG98355.1\| KLLA0F12540p [Kluyveromyces lactis]	117.0	[0..1]	[145..1]
orf19.8150, orf1... - orf19.519 CGDID:CAL0000092 Assembly 19, Contig19-10053 (98984, 98397) CDS, reverse complemented, tra... gi\|68476989, gi\|... - gi\|68477178\|ref\|XP_717382.1\| hypothetical protein CaO19.519 [Candida albicans SC5314], gi\|68476989\|r...	53.0	[0..20]	[111..71]
gi\|49656944, gi\|... - gi\|50425363\|ref\|XP_461275.1\| hypothetical protein DEHA0F22781g [Debaryomyces hansenii CBS767], gi\|49...	52.0	[0..1]	[110..46]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRNVYEACS NIIKEFGTHV VSADEVLAEK IDNAVPIPFK TREEIDADVE KDRNEGVFEG  60
   61 NIIPDIDLRV VHYYATQLCL NKYPHLINAF DETSLITLGL LIEKWVKDYL TSIQTEQGRQ 120
  121 SKVIGKGPCE FISKHIDYRH APGNI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	95.431798
Match:	PF05234.2
Description:	No description for PF05234.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits