YRC Public Data Repository - Protein Structure Prediction

Protein:	LDB7
Organism:	Saccharomyces cerevisiae
Length:	145 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LDB7.

Description	E-value	Query Range	Subject Range
LDB7 - Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Npl6p, and Htl1p to... LDB7_YEAST - Chromatin structure-remodeling complex protein RSC14 OS=Saccharomyces cerevisiae (strain ATCC 204508...	209.0	[0..1]	[105..1]
gi\|50286759, gi\|... - gi\|50286759\|ref\|XP_445809.1\| unnamed protein product [Candida glabrata], gi\|49525115\|emb\|CAG58728.1\|... gi\|49525115 - gi\|49525115\|emb\|CAG58728.1\| unnamed protein product [Candida glabrata]	84.0	[0..6]	[105..3]
gi\|44985778, gi\|... - gi\|45201008\|ref\|NP_986578.1\| AGL088Cp [Ashbya gossypii ATCC 10895], gi\|44985778\|gb\|AAS54402.1\| AGL08... gi\|44985778 - gi\|44985778\|gb\|AAS54402.1\| AGL088Cp [Ashbya gossypii ATCC 10895]	69.0	[0..8]	[105..7]
gi\|49640353 - gi\|49640353\|emb\|CAH02810.1\| KLLA0A05049p [Kluyveromyces lactis] gi\|50302573, gi\|... - gi\|50302573\|ref\|XP_451222.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640353\|emb\|CAH0281...	61.0	[0..6]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSNMGYYD VLAGLSALEK SSQVVFSATE LQQLTQQSHA TDKGIEGSEN SKAKVSKPKR  60
   61 VAVHGYLGGK VSLADAAQVE YEVGHSLLGS YVPRQQLEAL SSVDLFAPFP PHIRMQSCSR 120
  121 DTRCFSCRRR TIVSTLPITH REPQE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits