YRC Public Data Repository - Protein Structure Prediction

Protein:	YHR213W, YAR062W
Organism:	Saccharomyces cerevisiae
Length:	198 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR213W, YAR062W.

Description	E-value	Query Range	Subject Range
gi\|66866444 - gi\|66866444\|gb\|AAY57869.1\| FLO1/YAR062W fusion protein [Saccharomyces cerevisiae]	276.0	[0..1]	[198..140]
gi\|49525285 - gi\|49525285\|emb\|CAG58898.1\| unnamed protein product [Candida glabrata] gi\|49525285, gi\|... - gi\|50287099\|ref\|XP_445979.1\| EPA1_CANGA [Candida glabrata], gi\|49525285\|emb\|CAG58898.1\| unnamed prot...	227.0	[0..1]	[189..145]
gi\|34809538 - gi\|34809538\|gb\|AAQ82691.1\| Epa1p [Candida glabrata]	227.0	[0..1]	[189..145]
gi\|19072710 - gi\|19072710\|gb\|AAL84600.1\|AF474332_1 HA-tagged epithelial adhesion 1 [Cloning vector pBC214]	226.0	[0..1]	[189..182]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGYFLPPQT SSYTFRFAKV DDSAILSVGG NVAFECCAQE QPPITSTDFT INGIKPWQGS  60
   61 LPDNIGGTVY MYAGYYYPLK VVYSNAVSWG TLPISVELPD GTTVSDDFEG YVYSF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	11.275724
Match:	PF07691.3
Description:	No description for PF07691.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [116-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDDLSQSNCT IPDPSKHTTS IVTTTTELWT GTFTSTSTEM TTVTGTNGQP TDETVIVAKA  60
   61 PTTATSSSLS SSSSEQITSS ITS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits