| Protein: | CLN3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 580 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLN3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..580] | [1..580] |
|
|
1.0E-91 | [7..351] | [60..391] |
|
|
2.0E-91 | [2..349] | [129..445] |
|
|
7.0E-91 | [1..350] | [65..398] |
|
|
1.0E-90 | [10..332] | [108..404] |
|
|
3.0E-90 | [10..348] | [108..424] |
|
|
3.0E-90 | [7..351] | [60..393] |
|
|
2.0E-89 | [3..351] | [135..453] |
|
|
4.0E-89 | [1..350] | [64..397] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MAILKDTIIR YANARYATAS GTSTATAASV SAASCPNLPL LLQKRRAIAS AKSKNPNLVK 60
61 RELQAHHSAI SEYNNDQLDH YFR
|
|
Region B: Residues: [210-351] |
1 11 21 31 41 51
| | | | | |
1 TFDSYIDIFL FQSTSPLSPG VVLSAPLEAF IQQKLALLNN AAGTAINKSS SSQGPSLNIN 60
61 EIKLGAIMLC ELASFNLELS FKYDRSLIAL GAINLIKLSL NYYNSNLWEN INLALEENCQ 120
121 DLDIKLSEIS NTLLDIAMDQ NS
|
| Detection Method: |  |
| Confidence: | 77.39794 |
| Match: | 1vin__ |
| Description: | Cyclin A |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [84-209] |
1 11 21 31 41 51
| | | | | |
1 LSHTERPLYN LTNFNSQPQV NPKMRFLIFD FIMYCHTRLN LSTSTLFLTF TILDKYSSRF 60
61 IIKSYNYQLL SLTALWISSK FWDSKNRMAT LKVLQNLCCN QYSIKQFTTM EMHLFKSLDW 120
121 SICQSA
|
| Detection Method: | |
| Confidence: | 77.39794 |
| Match: | 1vin__ |
| Description: | Cyclin A |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [352-580] |
1 11 21 31 41 51
| | | | | |
1 FPSSFKSKYL NSNKTSLAKS LLDALQNYCI QLKLEEFYRS QELETMYNTI FAQSFDSDSL 60
61 TCVYSNATTP KSATVSSAAT DYFSDHTHLR RLTKDSISPP FAFTPTSSSS SPSPFNSPYK 120
121 TSSSMTTPDS ASHHSHSGSF SSTQNSFKRS LSIPQNSSIF WPSPLTPTTP SLMSNRKLLQ 180
181 NLSVRSKRLF PVRPMATAHP CSAPTQLKKR STSSVDCDFN DSSNLKKTR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
