| Protein: | PRP45 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 379 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP45.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..379] | [1..379] |
|
|
0.0 | [3..368] | [83..497] |
|
|
0.0 | [1..312] | [1..312] |
|
|
0.0 | [3..369] | [86..509] |
|
|
0.0 | [5..372] | [93..555] |
|
|
0.0 | [4..371] | [89..541] |
|
|
2.0E-99 | [3..372] | [92..526] |
|
|
5.0E-78 | [119..368] | [1..294] |
|
|
3.0E-70 | [7..255] | [113..358] |
|
Region A: Residues: [1-57] |
1 11 21 31 41 51
| | | | | |
1 MFSNRLPPPK HSQGRVSTAL SSDRVEPAIL TDQIAKNVKL DDFIPKRQSN FELSVPL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.427 | 0.542 | transcription activator activity | a.4.1 | Homeodomain-like |
| View | Download | 0.419 | 0.275 | transcription activator activity | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.469 | 0.028 | positive regulation of transcription from RNA polymerase II promoter | a.77.1 | DEATH domain |
| View | Download | 0.322 | 0.001 | positive regulation of transcription from RNA polymerase II promoter | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.469 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.427 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.419 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.377 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.328 | N/A | N/A | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.295 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.273 | N/A | N/A | a.5.2 | UBA-like |
| View | Download | 0.271 | N/A | N/A | a.60.2 | RuvA domain 2-like |
| View | Download | 0.268 | N/A | N/A | d.7.1 | LysM domain |
| View | Download | 0.252 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.244 | N/A | N/A | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.238 | N/A | N/A | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
| View | Download | 0.222 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.202 | N/A | N/A | a.4.1 | Homeodomain-like |
|
Region A: Residues: [58-312] |
1 11 21 31 41 51
| | | | | |
1 PTKAEIQECT ARTKSYIQRL VNAKLANSNN RASSRYVTET HQAPANLLLN NSHHIEVVSK 60
61 QMDPLLPRFV GKKARKVVAP TENDEVVPVL HMDGSNDRGE ADPNEWKIPA AVSNWKNPNG 120
121 YTVALERRVG KALDNENNTI NDGFMKLSEA LENADKKARQ EIRSKMELKR LAMEQEMLAK 180
181 ESKLKELSQR ARYHNGTPQT GAIVKPKKQT STVARLKELA YSQGRDVSEK IILGAAKRSE 240
241 QPDLQYDSRF FTRGA
|
| Detection Method: | |
| Confidence: | 109.853872 |
| Match: | PF02731 |
| Description: | SKIP/SNW domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [313-379] |
1 11 21 31 41 51
| | | | | |
1 NASAKRHEDQ VYDNPLFVQQ DIESIYKTNY EKLDEAVNVK SEGASGSHGP IQFTKAESDD 60
61 KSDNYGA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.562 | a.4.1 | Homeodomain-like |
| View | Download | 0.492 | a.3.1 | Cytochrome c |
| View | Download | 0.473 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.455 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.440 | a.4.1 | Homeodomain-like |
| View | Download | 0.410 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.406 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.396 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.384 | a.65.1 | Annexin |
| View | Download | 0.382 | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.382 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.368 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.363 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.358 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.341 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.340 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.329 | a.4.1 | Homeodomain-like |
| View | Download | 0.322 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.317 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.317 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.291 | a.112.1 | Description not found. |
| View | Download | 0.290 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.288 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.280 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.274 | a.77.1 | DEATH domain |
| View | Download | 0.272 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.240 | a.3.1 | Cytochrome c |
| View | Download | 0.237 | a.3.1 | Cytochrome c |
| View | Download | 0.231 | a.77.1 | DEATH domain |
| View | Download | 0.212 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.208 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| Term | Confidence | Notes |
| binding | 2.59005615358803 | bayes_pls_golite062009 |
| protein binding | 2.41769888237582 | bayes_pls_golite062009 |
| tubulin binding | 0.684160753873506 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.538779930266561 | bayes_pls_golite062009 |
|
Region A: Residues: [298-379] |
1 11 21 31 41 51
| | | | | |
1 QPDLQYDSRF FTRGANASAK RHEDQVYDNP LFVQQDIESI YKTNYEKLDE AVNVKSEGAS 60
61 GSHGPIQFTK AESDDKSDNY GA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.562 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.492 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.476 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.473 | N/A | N/A | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.455 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
