YRC Public Data Repository - Protein Structure Prediction

Protein:	DEP1
Organism:	Saccharomyces cerevisiae
Length:	362 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEP1.

Description	E-value	Query Range	Subject Range
DEP1 - Transcriptional modulator involved in regulation of structural phospholipid biosynthesis genes and m...	533.0	[0..1]	[334..1]
gi\|44983158, gi\|... - gi\|45190262\|ref\|NP_984516.1\| AEL344Wp [Ashbya gossypii ATCC 10895], gi\|44983158\|gb\|AAS52340.1\| AEL34... gi\|44983158 - gi\|44983158\|gb\|AAS52340.1\| AEL344Wp [Ashbya gossypii ATCC 10895]	219.0	[0..170]	[324..304]
gi\|49644570, gi\|... - gi\|50310823\|ref\|XP_455434.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644570\|emb\|CAG9814... gi\|49644570\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	216.0	[0..1]	[324..174]
gi\|49526380, gi\|... - gi\|50289281\|ref\|XP_447071.1\| unnamed protein product [Candida glabrata], gi\|49526380\|emb\|CAG60004.1\|... gi\|49526380 - gi\|49526380\|emb\|CAG60004.1\| unnamed protein product [Candida glabrata]	201.0	[0..172]	[334..358]
gi\|21780346 - gi\|21780346\|gb\|AAM77688.1\| unknown [Rice black streaked dwarf virus]	195.0	[0..100]	[277..4]
gi\|68532374, gi\|... - gi\|68532374\|ref\|YP_249756.1\| hypothetical protein FDV_s2gp1 [Fiji disease virus], gi\|4105673\|gb\|AAD0... CAPSD_FDVS - Putative major capsid protein OS=Fiji disease virus (isolate Sugarcane) GN=S2 PE=4 SV=1	177.0	[0..102]	[212..5]
gi\|46442954, gi\|... - gi\|68469603\|ref\|XP_721053.1\| hypothetical protein CaO19.8427 [Candida albicans SC5314], gi\|46442954\|...	125.0	[0..90]	[317..15]
gi\|50419725, gi\|... - gi\|50419725\|ref\|XP_458391.1\| hypothetical protein DEHA0C17424g [Debaryomyces hansenii CBS767], gi\|49...	123.0	[0..88]	[305..195]

Back

Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQTPQESE QTTAKEQDLD QESVLSNIDF NTDLNHNLNL SEYCISSDAG TEKMDSDEEK  60
   61 SLANLPELKY APKLSSLVKQ ETLTESLKRP HEDEKEAIDE AKKMKVPGEN EDESKEEEKS 120
  121 QELEEAIDSK EKSTDARDEQ GDEGDNEEEN NEEDNENENE HT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [163-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APPALVMPSP IEMEEQRMTA LKEITDIEYK FAQLRQKLYD NQLVRLQTEL QMCLEGSHPE  60
   61 LQVYYSKIAA IRDYKLHRAY QRQKYELSCI NTETIATRTF IHQDFHKKVT DLRARLLNRT 120
  121 TQTWYDINKE RRDMDIVIPD VNYHVPIKLD NKTLSCITGY AAHDSCAIPA SPWQRTSLAK 180
  181 ASSTATEPTR WTNSKSLWTE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.975	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits