YRC Public Data Repository - Protein Structure Prediction

Protein:	FUN14
Organism:	Saccharomyces cerevisiae
Length:	198 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUN14.

Description	E-value	Query Range	Subject Range
gi\|7544701 - gi\|7544701\|gb\|AAA35074.2\| FUN14 protein [Saccharomyces cerevisiae]	146.0	[0..1]	[74..1]
gi\|50310849, gi\|... - gi\|50310849\|ref\|XP_455447.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644583\|emb\|CAG9815... gi\|49644583 - gi\|49644583\|emb\|CAG98155.1\| KLLA0F08107p [Kluyveromyces lactis]	75.0	[0..33]	[195..6]
gi\|49653814, gi\|... - gi\|50419251\|ref\|XP_458148.1\| hypothetical protein DEHA0C11704g [Debaryomyces hansenii CBS767], gi\|49... gi\|49653814 - gi\|49653814\|emb\|CAG86219.1\| DEHA2C10692p [Debaryomyces hansenii]	57.0	[0..54]	[195..55]
gi\|49524600 - gi\|49524600\|emb\|CAG58202.1\| unnamed protein product [Candida glabrata] gi\|50285735, gi\|... - gi\|50285735\|ref\|XP_445296.1\| unnamed protein product [Candida glabrata], gi\|49524600\|emb\|CAG58202.1\|...	53.0	[0..53]	[195..50]
gi\|45190274, gi\|... - gi\|45190274\|ref\|NP_984528.1\| AEL332Wp [Ashbya gossypii ATCC 10895], gi\|44983170\|gb\|AAS52352.1\| AEL33... gi\|44983170 - gi\|44983170\|gb\|AAS52352.1\| AEL332Wp [Ashbya gossypii ATCC 10895]	51.0	[0..84]	[195..90]
gi\|46445287, gi\|... - gi\|68465122\|ref\|XP_723260.1\| potential mitochondrial protein [Candida albicans SC5314], gi\|68464743\|... orf19.12227, orf... - orf19.4763 CGDID:CAL0004515 Assembly 19, Contig19-10215 (87217, 86537) CDS, reverse complemented, tr...	50.0	[0..71]	[195..114]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLAFNMQRL VFRNLNVGKR MFKNVPLWRF NVANKLGKPL TRSVGLGGAG IVAGGFYLMN  60
   61 RQPSKLIFND SLGAAVKQQG PLEPTVGNST AITEERRNKI SSHKQMFLGS LFGVVLGVTV 120
  121 AKISILFMYV GITSMLLCEW LRYKGWIRIN LKNIKSVIVL KDVDLKKLLI DGLLGTEYMG 180
  181 FKVFFTLSFV LASLNANK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits