YRC Public Data Repository - Protein Structure Prediction

Protein:	FUN14
Organism:	Saccharomyces cerevisiae
Length:	198 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUN14.

Description	E-value	Query Range	Subject Range
gi\|7544701 - gi\|7544701\|gb\|AAA35074.2\| FUN14 protein [Saccharomyces cerevisiae]	146.0	[0..1]	[74..1]
gi\|50310849, gi\|... - gi\|50310849\|ref\|XP_455447.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644583\|emb\|CAG9815... gi\|49644583 - gi\|49644583\|emb\|CAG98155.1\| KLLA0F08107p [Kluyveromyces lactis]	75.0	[0..33]	[195..6]
gi\|49653814, gi\|... - gi\|50419251\|ref\|XP_458148.1\| hypothetical protein DEHA0C11704g [Debaryomyces hansenii CBS767], gi\|49... gi\|49653814 - gi\|49653814\|emb\|CAG86219.1\| DEHA2C10692p [Debaryomyces hansenii]	57.0	[0..54]	[195..55]
gi\|49524600 - gi\|49524600\|emb\|CAG58202.1\| unnamed protein product [Candida glabrata] gi\|50285735, gi\|... - gi\|50285735\|ref\|XP_445296.1\| unnamed protein product [Candida glabrata], gi\|49524600\|emb\|CAG58202.1\|...	53.0	[0..53]	[195..50]
gi\|45190274, gi\|... - gi\|45190274\|ref\|NP_984528.1\| AEL332Wp [Ashbya gossypii ATCC 10895], gi\|44983170\|gb\|AAS52352.1\| AEL33... gi\|44983170 - gi\|44983170\|gb\|AAS52352.1\| AEL332Wp [Ashbya gossypii ATCC 10895]	51.0	[0..84]	[195..90]
gi\|46445287, gi\|... - gi\|68465122\|ref\|XP_723260.1\| potential mitochondrial protein [Candida albicans SC5314], gi\|68464743\|... orf19.12227, orf... - orf19.4763 CGDID:CAL0004515 Assembly 19, Contig19-10215 (87217, 86537) CDS, reverse complemented, tr...	50.0	[0..71]	[195..114]

Back

Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLAFNMQRL VFRNLNVGKR MFKNVPLWRF NVANKLGKPL TRSVGLGGAG IVAGGFYLMN  60
   61 RQPSKLIFND SLGAAVKQQG PLEPTVGNST AITEERRNKI SSHKQMFLGS LFGVVLGVTV 120
  121 AKISILFMYV GITSMLLCEW LRYKGWIRIN LKNIKSVIVL KDVDLKKLLI DGLLGTEYMG 180
  181 FKVFFTLSFV LASLNANK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.597	a.7.4	Smac/diablo
View	Download	0.597	a.7.4	Smac/diablo
View	Download	0.525	a.238.1	Description not found.
View	Download	0.515	a.238.1	Description not found.
View	Download	0.442	a.69.2	Ypt/Rab-GAP domain of gyp1p
View	Download	0.442	a.69.2	Ypt/Rab-GAP domain of gyp1p
View	Download	0.438	a.130.1	Chorismate mutase II
View	Download	0.438	a.130.1	Chorismate mutase II
View	Download	0.417	a.47.1	STAT
View	Download	0.328	a.115.1	A virus capsid protein alpha-helical domain
View	Download	0.307	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.275	a.73.1	Retrovirus capsid protein, N-terminal core domain
View	Download	0.270	b.175.1	Description not found.
View	Download	0.269	c.116.1	alpha/beta knot

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits