| Protein: | VPS8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1176 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [423..1171] | [378..1096] |
|
|
0.0 | [416..1171] | [530..1193] |
|
|
9.0E-92 | [757..1158] | [552..918] |
|
|
2.0E-88 | [729..1174] | [91..586] |
|
|
1.0E-87 | [755..1159] | [548..903] |
|
Region A: Residues: [1-392] |
1 11 21 31 41 51
| | | | | |
1 MGTSKGCVLI FNYNEHLQTI LVPTLSEDPS IHSIRSPVKS IVICSDGTHV AASYETGNIC 60
61 IWNLNVGYRV KPTSEPTNGM TPTPALPAVL HIDDHVNKEI TGLDFFGARH TALIVSDRTG 120
121 KVSLYNGYRR GFWQLVYNSK KILDVNSSKE KLIRSKLSPL ISREKISTNL LSVLTTTHFA 180
181 LILLSPHVSL MFQETVEPSV QNSLVVNSSI SWTQNCSRVA YSVNNKISVI SISSSDFNVQ 240
241 SASHSPEFAE SILSIQWIDQ LLLGVLTISH QFLVLHPQHD FKILLRLDFL IHDLMIPPNK 300
301 YFVISRRSFY LLTNYSFKIG KFVSWSDITL RHILKGDYLG ALEFIESLLQ PYCPLANLLK 360
361 LDNNTEERTK QLMEPFYNLS LAALRFLIKK DN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [393-588] |
1 11 21 31 41 51
| | | | | |
1 ADYNRVYQLL MVVVRVLQQS SKKLDSIPSL DVFLEQGLEF FELKDNAVYF EVVANIVAQG 60
61 SVTSISPVLF RSIIDYYAKE ENLKVIEDLI IMLNPTTLDV DLAVKLCQKY NLFDLLIYIW 120
121 NKIFDDYQTP VVDLIYRISN QSEKCVIFNG PQVPPETTIF DYVTYILTGR QYPQNLSISP 180
181 SDKCSKIQRE LSAFIF
|
| Detection Method: | |
| Confidence: | 20.229148 |
| Match: | PF00637 |
| Description: | Region in Clathrin and VPS |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [589-800] |
1 11 21 31 41 51
| | | | | |
1 SGFSIKWPSN SNHKLYICEN PEEEPAFPYF HLLLKSNPSR FLAMLNEVFE ASLFNDDNDM 60
61 VASVGEAELV SRQYVIDLLL DAMKDTGNSD NIRVLVAIFI ATSISKYPQF IKVSNQALDC 120
121 VVNTICSSRV QGIYEISQIA LESLLPYYHS RTTENFILEL KEKNFNKVLF HIYKSENKYA 180
181 SALSLILETK DIEKEYNTDI VSITDYILKK CP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [801-1014] |
1 11 21 31 41 51
| | | | | |
1 PGSLECGKVT EVIETNFDLL LSRIGIEKCV TIFSDFDYNL HQEILEVKNE ETQQKYLDKL 60
61 FSTPNINNKV DKRLRNLHIE LNCKYKSKRE MILWLNGTVL SNAESLQILD LLNQDSNFEA 120
121 AAIIHERLES FNLAVRDLLS FIEQCLNEGK TNISTLLESL RRAFDDCNSA GTEKKSCWIL 180
181 LITFLITLYG KYPSHDERKD LCNKLLQEAF LGLV
|
| Detection Method: | |
| Confidence: | 13.585027 |
| Match: | PF00637 |
| Description: | Region in Clathrin and VPS |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1015-1176] |
1 11 21 31 41 51
| | | | | |
1 RSKSSSQKDS GGEFWEIMSS VLEHQDVILM KVQDLKQLLL NVFNTYKLER SLSELIQKII 60
61 EDSSQDLVQQ YRKFLSEGWS IHTDDCEICG KKIWGAGLDP LLFLAWENVQ RHQDMISVDL 120
121 KTPLVIFKCH HGFHQTCLEN LAQKPDEYSC LICQTESNPK IV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
