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View Structure Prediction Details

Protein: TFC3
Organism: Saccharomyces cerevisiae
Length: 1160 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFC3.

Description E-value Query
Range
Subject
Range
TFC3_YEAST - Transcription factor tau 138 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
TFC3 - Largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); ...
0.0 [1..1160] [1..1160]
SFC3_SCHPO - Transcription factor tau subunit sfc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfc3...
sfc3 - transcription factor TFIIIC complex subunit Sfc3
0.0 [8..411] [2..423]
gi|10863079 - gi|10863079|dbj|BAB16830.1| Tfc3p [Saccharomyces bayanus]
0.0 [4..224] [4..224]

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Predicted Domain #1
Region A:
Residues: [1-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLTIYPDEL VQIVSDKIAS NKGKITLNQL WDISGKYFDL SDKKVKQFVL SCVILKKDIE  60
   61 VYCDGAITTK NVTDIIGDAN HSYSVGITED SLWTLLTGYT KKESTIGNSA FELLLEVAKS 120
  121 GEKGINTMDL AQVTGQDPRS VTGRIKKINH LLTSSQLIYK GHVVKQLKLK KFSHDGVDSN 180
  181 PYINIRDHLA TIVEVVKRSK NGIRQIIDLK RELKFDKEKR LSKAFIAAIA WLDEKEYLKK 240
  241 VLVVSPKNPA IKIRCVKYVK DI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [263-1160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDSKGSPSFE YDSNSADEDS VSDSKAAFED EDLVEGLDNF NATDLLQNQG LVMEEKEDAV  60
   61 KNEVLLNRFY PLQNQTYDIA DKSGLKGIST MDVVNRITGK EFQRAFTKSS EYYLESVDKQ 120
  121 KENTGGYRLF RIYDFEGKKK FFRLFTAQNF QKLTNAEDEI SVPKGFDELG KSRTDLKTLN 180
  181 EDNFVALNNT VRFTTDSDGQ DIFFWHGELK IPPNSKKTPN KNKRKRQVKN STNASVAGNI 240
  241 SNPKRIKLEQ HVSTAQEPKS AEDSPSSNGG TVVKGKVVNF GGFSARSLRS LQRQRAILKV 300
  301 MNTIGGVAYL REQFYESVSK YMGSTTTLDK KTVRGDVDLM VESEKLGART EPVSGRKIIF 360
  361 LPTVGEDAIQ RYILKEKDSK KATFTDVIHD TEIYFFDQTE KNRFHRGKKS VERIRKFQNR 420
  421 QKNAKIKASD DAISKKSTSV NVSDGKIKRR DKKVSAGRTT VVVENTKEDK TVYHAGTKDG 480
  481 VQALIRAVVV TKSIKNEIMW DKITKLFPNN SLDNLKKKWT ARRVRMGHSG WRAYVDKWKK 540
  541 MLVLAIKSEK ISLRDVEELD LIKLLDIWTS FDEKEIKRPL FLYKNYEENR KKFTLVRDDT 600
  601 LTHSGNDLAM SSMIQREISS LKKTYTRKIS ASTKDLSKSQ SDDYIRTVIR SILIESPSTT 660
  661 RNEIEALKNV GNESIDNVIM DMAKEKQIYL HGSKLECTDT LPDILENRGN YKDFGVAFQY 720
  721 RCKVNELLEA GNAIVINQEP SDISSWVLID LISGELLNMD VIPMVRNVRP LTYTSRRFEI 780
  781 RTLTPPLIIY ANSQTKLNTA RKSAVKVPLG KPFSRLWVNG SGSIRPNIWK QVVTMVVNEI 840
  841 IFHPGITLSR LQSRCREVLS LHEISEICKW LLERQVLITT DFDGYWVNHN WYSIYEST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle