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View Structure Prediction Details

Protein: gi|79320934
Organism: Arabidopsis thaliana
Length: 307 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|79320934.

Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKMMTRVLS SPSSHVSSLK YSPRRVIRAS RDHLRAETLK SHQLPSGSSS TSLCSCGRKH  60
   61 FLEAASPTMP FLPICSPNAS RSKDVSETFH PQRPDWYKEL FAWFLST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMRSYEAEIA EYKRKLFEKL AGKAETVLEI GVGTGPNLKY FAGNENVCVF GMDPNHKMEK  60
   61 YACESAREAG MKPENFRFMH GVGEAIPLDD DSMDSVVATL VLCSVSDVTQ TLNEIKRVLK 120
  121 PGGIFLFIEH VAAKDGSFFR HVQNVLDPIQ QVVADGCHLT RNTDLHISAA GFDGGTEIND 180
  181 TAIYSFPWII RPHVYGAAYK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1xxlA
Description: The crystal structure of YcgJ protein from Bacillus subitilis at 2.1 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle