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View Structure Prediction Details

Protein: gi|79320934
Organism: Arabidopsis thaliana
Length: 307 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|79320934.

Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKMMTRVLS SPSSHVSSLK YSPRRVIRAS RDHLRAETLK SHQLPSGSSS TSLCSCGRKH  60
   61 FLEAASPTMP FLPICSPNAS RSKDVSETFH PQRPDWYKEL FAWFLST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMRSYEAEIA EYKRKLFEKL AGKAETVLEI GVGTGPNLKY FAGNENVCVF GMDPNHKMEK  60
   61 YACESAREAG MKPENFRFMH GVGEAIPLDD DSMDSVVATL VLCSVSDVTQ TLNEIKRVLK 120
  121 PGGIFLFIEH VAAKDGSFFR HVQNVLDPIQ QVVADGCHLT RNTDLHISAA GFDGGTEIND 180
  181 TAIYSFPWII RPHVYGAAYK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1xxlA
Description: The crystal structure of YcgJ protein from Bacillus subitilis at 2.1 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle