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View Structure Prediction Details

Protein: gi|62320544, gi|...
Organism: Arabidopsis thaliana
Length: 758 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|62320544, gi|....

Description E-value Query
Range
Subject
Range
gi|70878483 - gi|70878483|gb|EAN91735.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71649745 - gi|71649745|ref|XP_813586.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
370.0 [0..3] [758..876]
gi|88188037, gi|... - gi|88602575|ref|YP_502753.1| mucin 2, intestinal/tracheal [Methanospirillum hungatei JF-1], gi|88188...
227.0 [0..2] [757..1361]
FP1_MYTCO - Adhesive plaque matrix protein OS=Mytilus coruscus GN=FP1 PE=2 SV=1
226.0 [0..5] [755..122]
FP1_MYTED - Adhesive plaque matrix protein (Fragment) OS=Mytilus edulis GN=FP1 PE=1 SV=1
219.0 [0..3] [757..97]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...
210.0 [0..2] [677..1416]
gi|157763916 - gi|157763916|ref|XP_001674301.1| Hypothetical protein CBG18881 [Caenorhabditis briggsae AF16]
gi|187024180, gi... - gi|39594262|emb|CAE71840.1| Hypothetical protein CBG18881 [Caenorhabditis briggsae], gi|187024180|em...
207.0 [0..57] [758..215]
CE04485 - WBGene00018024 status:Partially_confirmed TR:Q20007 protein_id:AAB52641.1
206.0 [0..3] [748..467]

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Predicted Domain #1
Region A:
Residues: [1-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATAEESVS TLVTTMVDET YEFLAPRWFD FVNGETEDES RRAELWFQSA LSCAPSPSVP  60
   61 RIKARRSFKV EAMCNFNEAE EETLKDKEPL EPVVPIVSLQ SQPSQAKKAE VAPSKASTVK 120
  121 PSRISSKDAE VNNKTVDASD PTTEPIEDKE NIAPA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [156-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CTPKPPMQFS LGAKSVDLKK QQTARKIASL LKNPSTLRPK NQSQAKGSHQ KSVKGETNLN  60
   61 NIASTTNLIQ ENQAIKRQKL DDGKSRQILN PKPATLLHKT RNGLVNTGFN LCPSVTKHTP 120
  121 KENRKVYVRE QIAPFVSTAE LMKKFQTSTR DLFVQNRPKL TLTRPKEPE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [325-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVTSQRARPL RVKSSAELEE EMLAKIPKFK ARPVNKKILA APALPAPQRS TPHLPEFQEF  60
   61 HLQTMARANQ HAETSSIAST EVSKQHNDQK HHLTEPKSPV LQTMLRARPT IAKTTAELEQ 120
  121 EEL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [448-550]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKAPKFKAKP LNKKIFESKG EMGIFCNTKK HITIPQEFHF ATDERISRPE SVLDIFDKLS  60
   61 LNSESCHEKP LPRNTAPNPF NLKTEERGAE KEKKFYMELM YKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [551-646]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGDVKARVPK ANPYPYTTDY PVVPPKPEPK QCTQPEPFQL ESLVRHEEEM RREREERRRM  60
   61 ETEEAQKRLF KAQPVIKEDP IPVPEKVRMP LTEIQE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [647-758]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNLHVEHRAV ERADFDHKIK EKENQYKRYR EESEAAKMVE EERALKQMRK TMVPHARPVP  60
   61 NFNKPFLPQK SNKGTTKAKS PNLRVIKRTE RRTMMARPTI SAATSASAGQ MR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 20.886057
Match: PF06886.3
Description: No description for PF06886.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle