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View Structure Prediction Details

Protein: gi|57900281, gi|...
Organism: Oryza sativa Japonica Group
Length: 608 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57900281, gi|....

Description E-value Query
Range
Subject
Range
gi|218199149 - gi|218199149|gb|EEC81576.1| hypothetical protein OsI_25027 [Oryza sativa Indica Group]
gi|215697301, gi... - gi|50934395|ref|XP_476725.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|50509956|d...
783.0 [0..1] [608..1]

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Predicted Domain #1
Region A:
Residues: [1-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKAKLQSV SESAIRSIGL GYDIANDIRL KNCKQRGSPD PLLIELDHDK VQDIVLPGNL  60
   61 TVTGVSKSIK CDKGERMRFR SDVLSFQQMS EQFNRELSLS GKIPSGFFNA MFEFTGCWQK 120
  121 DASITKSLAF DGWCITLYTV ALSKAHIILK DHVKQAVPST WEPAALARFI KKFGTHIVVG 180
  181 VKMGGKDVIY LKQQHSSSLQ AVDVQKRLKE MSDQRFLDAN GHSDISLADS YAKDNKVEAR 240
  241 EQRLRFVESN PLNSYSSNEE LVMMPKRRGG RDKDIISHSE WLNTVQAEPD VISMSFIPIT 300
  301 SLLNGVPGCG FLNHAINLYL RYKPRVEELH QFLEFQLPRQ WAPVYSDLPL GPQRKRQSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 2qqhA
Description: No description for 2qqhA was found.

Predicted Domain #2
Region A:
Residues: [360-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASLPVNLIGP KLYVCTNMVD VGKRPVTGLR LFLEGQKSNK LAIHLQHLCS LPQIIQLEDD  60
   61 TYNPQTPEAE IRKYYEPIGS WKRFSHVCTA PVDSDDSSIV TGAHLEVVSH GFKKILFLRL 120
  121 HFSKVCNATS VKNPEWDGSP NLGQKSGLIS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [510-608]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLISTHFSTA ALKPAPRPAE VNINSAVYPG GPPVPVQTPK LLRFVDTTEM LRGPQDLPGY  60
   61 WVVSGAKLHL ERGKISLRVK YSLLTVNSPD DEFSPDEEF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle