| Protein: | SNX12_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 1010 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNX12_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
597.0 | [0..18] | [983..21] |
|
|
561.0 | [0..7] | [1001..8] |
|
|
481.0 | [0..9] | [998..4] |
|
|
479.0 | [0..5] | [1004..6] |
|
|
456.0 | [0..6] | [1002..63] |
|
|
435.0 | [0..6] | [1007..63] |
|
|
429.0 | [0..6] | [1004..15] |
|
|
420.0 | [0..58] | [1004..114] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MYQQHIFYFI TGGIFILWIL AHSFFVKIIY LWASGCLLWY CLETRTFENK NNLGTSEPFL 60
61 VNPAIFQKRA RQLALSKLLL RQP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.402 | d.222.1 | YbaB-like |
| View | Download | 0.366 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.253 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.220 | d.58.17 | Metal-binding domain |
| View | Download | 0.209 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
|
Region A: Residues: [84-305] |
1 11 21 31 41 51
| | | | | |
1 LYPGIPEISE EIESIISHFM QKYIKVWSYQ IIPEPTISNS IESHLRKCLM VLLSRVDEID 60
61 LADVLVKTVL PLITKHLRLF VEAEQLVVGN KAVSFTDHSE LSREVAAKYD HGRLHEAVLL 120
121 SGNPMVAQKR YLRNWTTQVL SIILPNYYET SPLVLSLVTE VIINTTLLPL VSYISDPDFF 180
181 NYLIIQASGS IIQRRRKIRR LKRAIRKQSN HFQVGARRLR LK
|
| Detection Method: | |
| Confidence: | 7.552842 |
| Match: | PF02194.6 |
| Description: | No description for PF02194.6 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [306-550] |
1 11 21 31 41 51
| | | | | |
1 DSQHSFEQYI HEIKKISNIS DARRLRSELM VQRRQLEQTE AFDFEFKQYR ERLQIAIITA 60
61 EKRISLLSGT PFQHKEAVLF EQVQSLLQIL SDSAAVSCFL EFMERKNRSR YLHFWLVVEG 120
121 LKESQDDPLN AHMIAPFSDI VSDHTDFTAI VKSYFESVDN PLDIPKPLTN TINKFVNQSK 180
181 DNLNPDLWVE ARNAMLMAQE HVFDIMQNSD YSEFVNSEIY YRFLAQDVVS DHKSTNSSAT 240
241 FSRLE
|
| Detection Method: | |
| Confidence: | 29.39794 |
| Match: | 1agrE |
| Description: | Regulator of G-protein signalling 4, RGS4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.56462084128628 | bayes_pls_golite062009 |
| protein binding | 1.55542857306536 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 1.13899380938509 | bayes_pls_golite062009 |
| GTPase regulator activity | 1.11716566045476 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.930307440055454 | bayes_pls_golite062009 |
| GTPase activator activity | 0.845105141539921 | bayes_pls_golite062009 |
| enzyme activator activity | 0.830104847091967 | bayes_pls_golite062009 |
|
Region A: Residues: [551-691] |
1 11 21 31 41 51
| | | | | |
1 ELGENIPAIS KQPSYLSISS SSKSINSSPS PSIQLSVSSS ISRDKNLSPL DLELDDPTYS 60
61 DEEEVLFAPP GDLQLSESID ELNNNIEELK AQLNAINTLI KKAELVADQK QLKSLTKNHQ 120
121 EIEKAIHRKE RQRDQYMSQE E
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [692-1010] |
1 11 21 31 41 51
| | | | | |
1 DSKLFNRSRV SIDSFKISKE ENTPDFAVYT IRIERLENGH VRSGWMVARR YREFAELHKQ 60
61 LKQTYPGVRS LKFPQKSIIT SLNKNVLEYR RGALEEYLQS LFRMPEVCDS KMLRMFLSQQ 120
121 NITAPQMFNP KEVGKKWKQL LEVLGFEVNN SFNASNVNTN SSFSGPISEF LVELFSPNDD 180
181 AKQQWLPKKT YISILEQLFG GALEKRIRLQ LFQLFTPEKI YRKLREFRRG LEGKSNHDHS 240
241 KDRRHSRARK PAYADRNQLK AEAGILLASM FPGYTPDIAV KRIFRILQNQ SLNAHVIYTL 300
301 LDEILLALKK HARSTNKAT
|
| Detection Method: | |
| Confidence: | 23.30103 |
| Match: | 2dybA |
| Description: | No description for 2dybA was found. |
