YRC Public Data Repository - Protein Structure Prediction

Protein:	SET10_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	547 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SET10_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|114654683 - gi\|114654683\|ref\|XP_522946.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	335.0	[0..4]	[427..82]
SETD3 - SET domain containing 3	334.0	[0..4]	[427..82]
gi\|109084840 - gi\|109084840\|ref\|XP_001103370.1\| PREDICTED: similar to SET domain containing 3 isoform 3 [Macaca mul...	333.0	[0..4]	[427..82]
gi\|149044195, gi... - gi\|149044195\|gb\|EDL97577.1\| rCG27725, isoform CRA_a [Rattus norvegicus], gi\|109479948\|ref\|XP_0010691...	330.0	[0..4]	[427..82]
SETD3_MOUSE - Histone-lysine N-methyltransferase setd3 OS=Mus musculus GN=Setd3 PE=1 SV=1	330.0	[0..4]	[427..82]
gi\|73964462 - gi\|73964462\|ref\|XP_547974.2\| PREDICTED: similar to CG32732-PA [Canis familiaris]	326.0	[0..4]	[438..82]
gi\|44984308 - gi\|44984308\|gb\|AAS53274.1\| AFL100Wp [Ashbya gossypii ATCC 10895] gi\|45198421, gi\|... - gi\|45198421\|ref\|NP_985450.1\| AFL100Wp [Ashbya gossypii ATCC 10895], gi\|44984308\|gb\|AAS53274.1\| AFL10...	319.0	[0..1]	[540..6]

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Predicted Domain #1

Region A:
Residues: [1-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLLHEALQ NGCKLHKSVE FIQSRDDNAC FGSYIAVAQN DIAPDQLLIS CPFEYAITYN  60
   61 KAKEELKKLN PNFESCNPHI TLCTFLALES LKGIQSKWYG YIEYLPKTFN TPLYFNENDN 120
  121 AFLISTNAYS AAQERLHIWK HEYQEALSLH PSPTERFTFD LYIWSATVFS SRCFSSNLIY 180
  181 KDSESTPILL PLIDSLNHKP KQPILWNSDF QDEKSVQLIS QELVAKGNQL FNNYGPKGNE 240
  241 ELLMGYGFCL PDNPFDTVTL KVAIHPDLPH KDQKAAILEN DCQFQLSNLV FFLPKSPDKE 300
  301 IFQKILQCLA VVTASSLELR KLTAHLLTGD LASYVPSLRG QIKSLEVLLM YIDSRADLLL 360
  361 KSNPQVSPTS ERQVWAKIYR DSQINILQDS ITYVKNYMEE S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.0
Match:	1mlvA
Description:	RuBisCo LSMT C-terminal, substrate-binding domain; RuBisCo LSMT catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [402-547]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQKTYKPLPN LLQYLILNSI SIFLLQHPLF APLSHAIESL YGSTDAEALV ATDEQDILMI  60
   61 LICVYCLSIS EKLPFSISML VEGYPAVANP EGVEVFEILD EMFFQQFTNV FGESKHFNKE 120
  121 NVSWALQLVN DESLDFSGFT FIIAHN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits