YRC Public Data Repository - Protein Structure Prediction

Protein:	POPI_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	698 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POPI_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|42549389, gi\|... - gi\|46128529\|ref\|XP_388818.1\| hypothetical protein FG08642.1 [Gibberella zeae PH-1], gi\|42549389\|gb\|E...	692.0	[0..2]	[687..19]
orf19.2404 - orf19.2404 CGDID:CAL0001450 Assembly 19, Contig19-10148 (40347, 42686) CDS, translated using codon t... gi\|68485718, gi\|... - gi\|68485718\|ref\|XP_713237.1\| potential RNAseP/MRP complex component [Candida albicans SC5314], gi\|46...	676.0	[0..8]	[685..3]
gi\|40741050, gi\|... - gi\|67903408\|ref\|XP_681960.1\| hypothetical protein AN8691.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	654.0	[0..16]	[688..22]
gi\|85074925 - gi\|85074925\|ref\|XP_965830.1\| hypothetical protein NCU00690 [Neurospora crassa OR74A] gi\|32408779, gi\|... - gi\|32408779\|ref\|XP_324870.1\| hypothetical protein [Neurospora crassa], gi\|28927643\|gb\|EAA36594.1\| co...	640.0	[0..8]	[604..34]
gi\|116193301, gi... - gi\|88182281\|gb\|EAQ89749.1\| hypothetical protein CHGG_06368 [Chaetomium globosum CBS 148.51], gi\|1161...	630.0	[0..12]	[692..84]
gi\|169778811 - gi\|169778811\|ref\|XP_001823870.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83772609 - gi\|83772609\|dbj\|BAE62737.1\| unnamed protein product [Aspergillus oryzae]	606.0	[0..6]	[692..15]
gi\|114190907, gi... - gi\|115386736\|ref\|XP_001209909.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	590.0	[0..6]	[694..15]
POP1_YEAST - Ribonucleases P/MRP protein subunit POP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... POP1 - Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursor...	565.0	[0..1]	[588..5]
gi\|44980679 - gi\|44980679\|gb\|AAS50584.1\| ABL187Cp [Ashbya gossypii ATCC 10895] gi\|45185043, gi\|... - gi\|45185043\|ref\|NP_982760.1\| ABL187Cp [Ashbya gossypii ATCC 10895], gi\|44980679\|gb\|AAS50584.1\| ABL18...	559.0	[0..11]	[577..9]
gi\|70984687, gi\|... - gi\|70984687\|ref\|XP_747850.1\| ribonuclease P complex subunit Pop1 [Aspergillus fumigatus Af293], gi\|6...	550.0	[0..16]	[690..25]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRSTGGTQP KGLNVKRSKL ADARFIEVES PALSNGAVDL KKFIESRSFE ITALQDAMKR  60
   61 SKESSAQRAF QALPRCLRRR AASHNIKRIP KGLRDRALYE MQLSSSSTLP IAPSRQRLKR 120
  121 FIKRLRRKLA KSGETKAIDS TGSLVTDNST DDSRIPSLAA VKLIRGKFAG RQLRKVWLPT 180
  181 HLWVC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.130768
Match:	PF06978.2
Description:	No description for PF06978.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [186-698]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRAHMINAWG YAIPEKPTEK SYRPTHRAAF RKDAIAFDMS YEPLFCISGP YEALKEKFGN  60
   61 SFANGLPPVF LNSSRSFTSY LVKSDIHELI CPCFLQWNNP TEDDKKQIPV KNPTECVQLV 120
  121 IRLHPSAFLQ AWNYLSGIAV LDDRIAMHDW RLDLASFDIH GPDSNIMLHK VFDDVELDEA 180
  181 GKVWQSISNY SSACLPMGAS ISVKALVNTR CDKNLSEKGE KSLLDSAENS LPASANQYST 240
  241 HFRYWERQEI PSFAVFENKN RHTHEKKSSE KEVIPVYITY RKEWNGLTVI LPWDYAKFVW 300
  301 RKMMYQKGIR FGGLENLHQI AFEKRMPFFP IDYPDTISGQ LCEEERKKRN EDSWKRRPPA 360
  361 KRVNYQKFGD NFSEIGNPFC CDWVYLNEMV KASRDEDKTL QLVRVQVQLV QRGSLQDRAR 420
  421 IYCLSDDELS KWKTIIYKEN LTAENLLYPK CPNETAIIGF VTTGNFNLNA GKPSGIANVL 480
  481 AKTIKNEKSG YCIIRNVGCS VPRLAQWKFN QSH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.55
Match:	1wsrA
Description:	Crystal Structure of Human T-protein of Glycine Cleavage System
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits