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View Structure Prediction Details

Protein: gi|115441309, gi...
Organism: Oryza sativa Japonica Group
Length: 582 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115441309, gi....

Description E-value Query
Range
Subject
Range
gi|50931509, gi|... - gi|50931509|ref|XP_475282.1| putative embryogenesis-associated protein [Oryza sativa (japonica culti...
404.0 [0..8] [580..2]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVAGGGGG GGGESVGELL LRAAAMVPAE HYALAALAVV SVLAYGFLEL HFLGDLLRGF  60
   61 RGGRVELTFH PASEIYHRVA SKCRSLHGRY LATPWLASPH LQTLFLGISG RPPSFTYKRQ 120
  121 LYTVHDGGTI ALDWLLA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [138-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDSKGSDGIL SEDASAPLVV IVPGLTSDSA AAYVKHMAYS MATKGCNTVV SNHRGLGGVS  60
   61 ITSDCLYNAG WTEDLREVIN YLHHKYPKAP MLCVGTSIGA NIVVKYLGEE GENTPVAGAA 120
  121 SICSPWDLVV GDRFISRKLV QRFYDKALAF GLKGYAKLHE PVLVRLANWE GIKKSRSIRE 180
  181 FDHHATCMVA KYETVDTYYR RCSSASYVGN VSVPLLCVNA LDDPLCTREA IPWDECRANK 240
  241 NIVLATTPNG GHLAFFQGLT AGRLWWVGAV SEFLFALLDS KY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.39794
Match: 1va4A
Description: Pseudomonas fluorescens aryl esterase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 1.59304123699293 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
lipase activity 0.849473630399459 bayes_pls_golite062009
binding 0.549512873906854 bayes_pls_golite062009
carboxylesterase activity 0.424330502936163 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.264183693934251 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [420-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQQKAQDHI LRSSLESSID KSPYVNVMED GMIAPVTDDG PCDDITPSHQ VNDIKQDNGD  60
   61 FTQQNEHTRE VDDKNITEVN AMPSQSPEQS AGQQVEEHYV GKFHEAIAPV KRSINQLTRY 120
  121 QGKSVWLLAY IAFVTSWPLL GSLAFIAFRK KFRNNLLAKW LRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle