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View Structure Prediction Details

Protein: gi|222866228, gi...
Organism: Populus trichocarpa
Length: 823 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|222866228, gi....

Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNGKYVRYT PEQVEALERL YHECPKPTST RRQQLIRECP ILSHIEPKQI KVWFQNRRCR  60
   61 EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENSYFRQQTQ NATTLATTDT 120
  121 SCESVVTSGQ HRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.09691
Match: 1homA
Description: DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [134-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPQHPPRDAS PAGLLSIAEE NLAQFLSKAT GTAVEWVQMP GMKPGPDSIG IVAISHGCTG  60
   61 VAARACGLVG LEPTRVAEIL KDRPSWFRDC RAVDVINAMS TANGGTIELL YMQLYAPTTL 120
  121 APARDFLLLR YTSVLEDGSL VVCERSLNNT QNGPSMPPTQ HFVRAEMLPS GYLIRPCEGG 180
  181 GSIIHIVDHM DLEPWSVPEV LRPLYESSTL LAQKTTMAAL RHLRQISQEI SQPNVTGWG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.0
Match: 2psoA
Description: No description for 2psoA was found.

Predicted Domain #3
Region A:
Residues: [373-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRPAALRALS QRLSKGFNEA VNGFADEGWS LLESDGIDDV TVLVNSSPTK TMGVNFSYDN  60
   61 GFPSMNNAVL CAKASMLLQN VPPAILLRFL REHRSEWADN GIDAYAASAI KAGPCSLPVS 120
  121 RAGNFGGQVI LPLAHTIENE EAKVIKLENM GYREDMLMPG DVFLLQLC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [541-668]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGVDENAVGT CAELIFAPID ASFSDDAPII PSGFRIIPLD SGMDASSPNR TLDLASALEV  60
   61 GPAGNRASGD LSGRSGCTKS VMTIAFQFAF EMHLQENVAS MARQYVRSII ASVQRVALAL 120
  121 SPSHFGSH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [669-823]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGFWPPHGTP EAHTLARWIC ESYRIYLGVK LLKNEGSDSI LKTLWHHSDA LVCCSLKTLP  60
   61 VFTFSNQAGL DMLETTLVAL QDITLEKIFD DNGRKTLCSE FPQIMQQGFM CLPGGICLSS 120
  121 MGRPVSYERA VAWKVLNEEE SAHCICFMFM NWSFV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 92.958607
Match: PF08670.3
Description: No description for PF08670.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle