YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|78706792, gi|...
Organism: Drosophila melanogaster
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|78706792, gi|....

Description E-value Query
Range
Subject
Range
gi|108873998, gi... - gi|157124431|ref|XP_001654056.1| sodium/dicarboxylate cotransporter, putative [Aedes aegypti], gi|10...
320.0 [0..10] [516..61]

Back

Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSWRIIWQA FQCMYLVANM ALFWITEAIP LYLTALFPVV FLPLFGILTS EKVCSFYFSD  60
   61 TVVMFIGGLL IALAIEYSNL HQRIALNTIL IVGCSPRRLH FGLVMVTCFI SLWISNSAAT 120
  121 AMMCPIVKAV LNEMETQNIF AIY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [144-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTQEEEPVEE GDPPHPSTIS MAFYFGIAYS SSIGGCGTLI GTGTNLTYKG LYDTRFPNSD  60
   61 EKIDFPIFMA YSVPFVVLVL IFLTYFSLQV THMGLFRPNS KIGQEVKKGA ESQDVVKDVI 120
  121 KQRKAELGPM SCHEIQVGLL FVLMIFLLFT RKPGFF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [300-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGWADFLNAK AIGSGPPVFF ATILLFALPT QYTFFKYCCG KAPFPGQTLD ACLSWVYCQK  60
   61 YTPFGLAFLL GGFALAEGSR VSGMAKMLGE SLAFAGEMHS VLVISMCIII SLFCTAFASN 120
  121 VAICNILIPI FSEMALAIEV HPMKLTFPAA LACSLAFHLP VSTPPNAIIS GFTGLKTKYM 180
  181 AIAGILPTCW AFLCLLFTGT VWTMLIYPGT TEFPSWAI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle