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View Structure Prediction Details

Protein: stmA-PC
Organism: Drosophila melanogaster
Length: 834 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for stmA-PC.

Description E-value Query
Range
Subject
Range
gi|25012857 - gi|25012857|gb|AAN71517.1| RH07443p [Drosophila melanogaster]
1112.0 [0..1] [834..1]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALIRCCFEP PELPEFFDSF VQKCTDPSCC CGCCSALRPR YKRLVDNIFP VNPEDGLVKS  60
   61 NMEKLTFYSL SSPDKLDRIG EYLYQKATKD INRKRYKLAE IAMEAMDLLL QACHAQTTLN 120
  121 LFVESFLRMV QKLLED

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 1q1sC
Description: Mouse Importin alpha- phosphorylated SV40 CN peptide complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [137-834]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNPNLKIMAT NSFVKFANIN EDTPSYHRRY DFFISKFSSM CHSDAASMRD SLRLAGIKGL  60
   61 QGVIRKTVSD DLVENIWEAE HMEKIVPSLL FNMQFCVNVM FVKKNLLASG DLTPVEDATN 120
  121 VTPPALAEEV LRELVGRASF GHIRSVLKPL LTHLDRHELW VPNTFAIHTF RIVMISIQPQ 180
  181 YSYTVVETLM QHLDNNFKSS PKTRTSLAVV LSKIIAIAAG ESVGPSALDI INNLLTHLRT 240
  241 SVSTTSEITP EESQYQEALI NALGEFANHH PDYQKIEIML FIMNTVPDLS KKSKGDQMLQ 300
  301 NILLKSLLKV GTQYSTVSFE KAFPASFLQP LLKMARAPHN PTRMVVMQIL QALLDRHQNE 360
  361 QVLSSVSVKP YPALSQEPPS RSDIIFTHKY GANIMQALID SMALSDRVDA LTSSFNTAAL 420
  421 LIVEMSCNET VQEFLLFILG IQQVACTVDT LGNVHKCSLH AISIGLLVLI SRVSGINNLL 480
  481 EYAQKIVDAR REEASHFLPP LLEPKKLAGK TFNLQLPHLA IDKLALGECL QNAGMDAQRL 540
  541 NTGAPYSLNQ TDHPGHRHSW VESVSNQLTQ RNSSADLTVY NGDVDSVSSS PGVCKKLLAP 600
  601 EFNFDAMKRA LAEPTEAAKR EQRERQMQIV RTFREGEFDD LMRRTEPKHD LIQNRLNELF 660
  661 NSLAVERQIT QSDTKSSQLQ ASNEKPIYET NFPELFYY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.37
Match: 2ie3A
Description: No description for 2ie3A was found.

Predicted functions:

Term Confidence Notes
transporter activity 2.3766833486706 bayes_pls_golite062009
binding 2.33303322187387 bayes_pls_golite062009
protein transporter activity 2.05261715803466 bayes_pls_golite062009
substrate-specific transporter activity 1.87445049214426 bayes_pls_golite062009
cell adhesion molecule binding 1.66484599039895 bayes_pls_golite062009
protein binding 1.5114863464349 bayes_pls_golite062009
transmembrane transporter activity 1.2724388835449 bayes_pls_golite062009
cytoskeletal protein binding 1.15714523804341 bayes_pls_golite062009
signal transducer activity 0.892292340575145 bayes_pls_golite062009
molecular transducer activity 0.892292340575145 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.80477645195818 bayes_pls_golite062009
protein transmembrane transporter activity 0.262911024668873 bayes_pls_golite062009
active transmembrane transporter activity 0.260663498540354 bayes_pls_golite062009
clathrin binding 0.116858812089923 bayes_pls_golite062009
nucleic acid binding 0.0909907234708774 bayes_pls_golite062009
primary active transmembrane transporter activity 0.0128158555898987 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.00672548245940896 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle