YRC Public Data Repository - Protein Structure Prediction

Protein:	UBX3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	410 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBX3_SCHPO.

Description	E-value	Query Range	Subject Range
NSF1C_RAT - NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1	278.0	[0..2]	[409..4]
NSF1C_MOUSE - NSFL1 cofactor p47 OS=Mus musculus GN=Nsfl1c PE=1 SV=1	277.0	[0..2]	[409..4]
gi\|27735468, gi\|... - gi\|27735468\|gb\|AAH41297.1\| Nsfl1c protein [Xenopus laevis], gi\|148235839\|ref\|NP_001080187.1\| p47 [Xe...	277.0	[0..4]	[410..6]
gi\|123993027, gi... - gi\|124000007\|gb\|ABM87512.1\| NSFL1 (p97) cofactor (p47) [synthetic construct], gi\|123993027\|gb\|ABM841... NSF1C_PONAB - NSFL1 cofactor p47 OS=Pongo abelii GN=NSFL1C PE=2 SV=1 NSFL1C - NSFL1 (p97) cofactor (p47) NSF1C_PONPY - NSFL1 cofactor p47 - Pongo pygmaeus (Orangutan) gi\|114680495, gi... - gi\|114680497\|ref\|XP_525244.2\| PREDICTED: p47 protein isoform 10 [Pan troglodytes], gi\|114680495\|ref\|...	277.0	[0..2]	[409..4]
NSF1C_BOVIN - NSFL1 cofactor p47 OS=Bos taurus GN=NSFL1C PE=2 SV=1	276.0	[0..2]	[409..4]
gi\|114680493 - gi\|114680493\|ref\|XP_001154020.1\| PREDICTED: p47 protein isoform 5 [Pan troglodytes]	276.0	[0..2]	[409..4]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDREDILKEF CNRNNIDVSQ GRFFLESTNW NYELATALLH EVIPPEEDHG LQPSSDVSKV  60
   61 PEVTGSSSGI SGGDQQPPRP LQRQQNT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGQGMKSGTA SKKFATLRDL EGNDESAEEK SHLFTGGEKS GLSVEDGDPD PKKQLVRDIL  60
   61 EKARQHTI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [156-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLDEQDSGP SSLASSWASV GQRLGTENEA SGSTTPVTQS GPPRENPPTE SQPEKPLRRT  60
   61 LYFWRNGFSV DDGPIYTYDD PANQEMLRYI NSGRAPLHLL GVSMNQPIDV VVQHRMDEDY 120
  121 VAPFKPFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.522879
Match:	1vazA
Description:	Solution structures of the p47 SEP domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [284-410]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKGQRLGSTY MQPRMSQMPG GLYTDTSTSS SVPINVKPNS TTPHASLQID ENKPTTRIQV  60
   61 RLSNGGRTVL TVNLSHTLHD IYEAVRAVSP GNFILSVPFP AKTLEDDPSV TVEAASLKNA 120
  121 SLVQKSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.154902
Match:	1s3sG
Description:	Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits