YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|68126941
Organism:	Leishmania major
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|68126941.

Description	E-value	Query Range	Subject Range
gi\|114572319 - gi\|114572319\|ref\|XP_514173.2\| PREDICTED: similar to ribosomal protein S25 [Pan troglodytes]	152.0	[0..8]	[114..79]
gi\|109018521 - gi\|109018521\|ref\|XP_001108187.1\| PREDICTED: similar to 40S ribosomal protein S25 [Macaca mulatta]	150.0	[0..3]	[114..191]
gi\|73955048 - gi\|73955048\|ref\|XP_536549.2\| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris]	148.0	[0..31]	[114..113]
gi\|125778350, gi... - gi\|54639683\|gb\|EAL29085.1\| GA19768-PA [Drosophila pseudoobscura], gi\|125778350\|ref\|XP_001359933.1\| G...	144.0	[0..31]	[110..38]
gi\|47188265 - gi\|47188265\|emb\|CAF87311.1\| unnamed protein product [Tetraodon nigroviridis]	142.0	[0..31]	[114..52]
gi\|60652757 - gi\|60652757\|gb\|AAX29073.1\| ribosomal protein S25 [synthetic construct]	137.0	[0..31]	[114..39]
gi\|109075654, gi... - gi\|109108908\|ref\|XP_001100935.1\| PREDICTED: similar to 40S ribosomal protein S25 [Macaca mulatta], g... ENSOCUP000000148... - pep:novel scaffold:oryCun2:GL018823:491762:493564:-1 gene:ENSOCUG00000017256 transcript:ENSOCUT00000... RS25_MOUSE - 40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=1 SV=1 RS25_BOVIN - 40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1 gi\|217038883 - gi\|217038883\|gb\|ACJ76798.1\| ribosomal protein S25 [Ailuropoda melanoleuca] gi\|123992117, gi... - gi\|60655861\|gb\|AAX32494.1\| ribosomal protein S25 [synthetic construct], gi\|123999452\|gb\|ABM87284.1\| ... gi\|149716588 - gi\|149716588\|ref\|XP_001503113.1\| PREDICTED: similar to mCG10725 [Equus caballus] ENSCJAT000000442... - null, null RS25_SHEEP - 40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1 gi\|197129813, gi... - gi\|224083044\|ref\|XP_002188281.1\| PREDICTED: putative 40S ribosomal protein S25 variant 1 [Taeniopygi... RPS25 - ribosomal protein S25 gi\|55637069 - gi\|55637069\|ref\|XP_508801.1\| PREDICTED: similar to ribosomal protein S25 [Pan troglodytes] RS25_RAT - 40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1 gi\|90075214 - gi\|90075214\|dbj\|BAE87287.1\| unnamed protein product [Macaca fascicularis] gi\|542174986\|ref... - PREDICTED: 40S ribosomal protein S25 [Zonotrichia albicollis]	137.0	[0..31]	[114..39]
gi\|109473825, gi... - gi\|109473825\|ref\|XP_001071631.1\| PREDICTED: similar to 40S ribosomal protein S25 [Rattus norvegicus]...	136.0	[0..31]	[114..39]
gi\|52346074, gi\|... - gi\|52346074\|ref\|NP_001005084.1\| ribosomal protein S25 [Xenopus (Silurana) tropicalis], gi\|50370198\|g... gi\|147901123, gi... - gi\|49670424\|gb\|AAH75187.1\| MGC82151 protein [Xenopus laevis], gi\|147901123\|ref\|NP_001086475.1\| MGC82...	136.0	[0..31]	[114..39]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKAGQTKK AKMEAANKGA KKTTKKWSKG QSREALQNAV MFDKETYDKL RSEVPKYKLI  60
   61 TPSIISDRLK IAVSIAAAGL KQLCREKLIR LVSCSSKTRV YTRIVQAAPA EAAAAAPAAE 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.15
Match:	2htjA
Description:	No description for 2htjA was found.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.33018178569403	bayes_pls_golite062009
nucleic acid binding	2.08381326816932	bayes_pls_golite062009
DNA binding	1.9676311639772	bayes_pls_golite062009
binding	1.44413608907382	bayes_pls_golite062009
transcription factor activity	1.41371225645879	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: