YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|62548872
Organism:	Plasmodium falciparum
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|62548872.

Description	E-value	Query Range	Subject Range
gi\|55770563 - ref\|XP_550272.1\| putative receptor-like protein kinase INRPK1 [Oryza sativa (japonica cultivar-group... gi\|115434762, gi... - gi\|55770563\|ref\|XP_550272.1\| putative receptor-like protein kinase INRPK1 [Oryza sativa (japonica cu...	197.0	[0..3]	[337..297]
FBpp0300846 - type=protein; loc=3R:join(22363345..22363506,22370765..22370882,22380079..22380661,22380955..2238137...	195.0	[0..3]	[333..59]
gi\|186464136, gi... - gi\|23128321\|ref\|ZP_00110172.1\| COG4886: Leucine-rich repeat (LRR) protein [Nostoc punctiforme PCC 73...	194.0	[0..2]	[332..170]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDNVKLMN YNDIKKIGRE HNLYETDELN EVLYLHMKGF HNIDGLDTFI NLKCLFLNNN  60
   61 CIKKIDNLNN LVNLKALYLQ NNDISTIENI TCTSLVILNL SNNKIKTLDN IQHLKLLQTL 120
  121 NISNNLIESV KDIEQISVLE NLSHLDISNN LIQFNNNIEK PNNHIQDFTH DYNNDQFLIE 180
  181 NSATEIGKDF LQNNEICYML NFYNNFNDEI NKEEICPSVK YHKNIKDMDE LTKLKFYFLR 240
  241 EFIIFIKKIK KLKTLFIKNN PFISQIRHVS KYVIANIPTL VFLDDKKIKK EDICLARIFL 300
  301 KKGIREENEL KKIFEKKKMD KYKNLSQKYH SFLMNKKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.09691
Match:	2omuA
Description:	No description for 2omuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits