YRC Public Data Repository - Protein Structure Prediction

Protein:	MSMO_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSMO_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|42554849, gi\|... - gi\|46136629\|ref\|XP_390006.1\| hypothetical protein FG09830.1 [Gibberella zeae PH-1], gi\|42554849\|gb\|E...	250.0	[0..1]	[299..4]
gi\|45269545 - gi\|45269545\|gb\|AAS56153.1\| YGR060W [Saccharomyces cerevisiae]	249.0	[0..2]	[300..7]
gi\|107785178, gi... - gi\|107785180\|gb\|ABF84061.1\| C-4 sterol methyl oxidase [Chaetomium globosum], gi\|107785178\|gb\|ABF8406...	248.0	[0..1]	[299..6]
gi\|83775259 - gi\|83775259\|dbj\|BAE65381.1\| unnamed protein product [Aspergillus oryzae] gi\|169784105 - gi\|169784105\|ref\|XP_001826514.1\| hypothetical protein [Aspergillus oryzae RIB40]	246.0	[0..1]	[299..5]
gi\|85106720 - gi\|85106720\|ref\|XP_962240.1\| C-4 methylsterol oxidase, variant [Neurospora crassa OR74A] gi\|28923840, gi\|... - gi\|32411553\|ref\|XP_326257.1\| hypothetical protein [Neurospora crassa], gi\|28923840\|gb\|EAA33004.1\| C-...	246.0	[0..1]	[287..6]
gi\|70982279, gi\|... - gi\|70982279\|ref\|XP_746668.1\| C-4 methyl sterol oxidase Erg25 [Aspergillus fumigatus Af293], gi\|66844...	246.0	[0..1]	[295..1]
gi\|68466442, gi\|... - gi\|68466442\|ref\|XP_722703.1\| potential C-4 sterol methyl oxidase [Candida albicans SC5314], gi\|46444... orf19.4631 - ERG251 CGDID:CAL0003665 Assembly 19, Contig19-10212 (132343, 133308) CDS, translated using codon tab...	239.0	[0..2]	[300..10]
gi\|44985165, gi\|... - gi\|45199090\|ref\|NP_986119.1\| AFR572Wp [Ashbya gossypii ATCC 10895], gi\|44985165\|gb\|AAS53943.1\| AFR57... gi\|44985165 - gi\|44985165\|gb\|AAS53943.1\| AFR572Wp [Ashbya gossypii ATCC 10895]	238.0	[0..2]	[300..7]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTTSEVIVG TGFQAIRQQL AQMHPELNFV EQLWLAYYKW FDNDVVATGL MSFLLHELIY  60
   61 FGRCIPWMII DAMPYFRRWK IQPKKVPTLA EQWECTRLVL LSHFTVELPQ IWLFDPMCAT 120
  121 FGLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [125-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSVPFPPVTK MIWQITLFFF LEDTWHYWAH RLFHYGIFYR FIHKVHHRYS APFGLSAEYA  60
   61 HPLEIILLGA GTVFVPLMWC YFTHDLHLVT MYIWITLRLF QAVDSHAGYD FPWSLNKFLP 120
  121 IWAGADHHDY HHMAFKDNFS SSFRWWDAVL KTDQNYHQFK ARRLAAKYEA ESKKAK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.986
Match:	2f5kA
Description:	No description for 2f5kA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.10787756282836	bayes_pls_golite062009
transcription regulator activity	1.56029029012385	bayes_pls_golite062009
chromatin binding	1.51511928418505	bayes_pls_golite062009
transcription repressor activity	0.991756552156335	bayes_pls_golite062009
protein binding	0.759327550978008	bayes_pls_golite062009
nucleic acid binding	0.57519986764207	bayes_pls_golite062009
DNA binding	0.293109488455755	bayes_pls_golite062009
catalytic activity	0.168308115787289	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: