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View Structure Prediction Details

Protein: gi|77549704, gi|...
Organism: Oryza sativa Japonica Group
Length: 506 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|77549704, gi|....

Description E-value Query
Range
Subject
Range
gi|115712687, gi... - gi|115923998|ref|XP_001181978.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...
483.0 [0..4] [500..29]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDDIDARYE VPRTAEFIRA RAYTRVALQF PDEMLRDAAA VAQALRRELG GGGVKLFVMA  60
   61 DTAYNSCCVD EVGASHIDAQ CVVHYGHACM SPTSNLPAFF VFGKTPLDTD ACGRSLLECS 120
  121 RESD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [125-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRILVFYGLE YAHALDDLKA VVAELYKSHS RSVEVQYADV LCSVMSPSSA AEVEHGQSDG  60
   61 STHSDDLSIQ SDVATFVNNC 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [205-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CNVEGSTRKY SLGGLTWSTS IDDNMEDYLL YWIGQDNSAF ANIVLTFNKC DIVRYDTVAN  60
   61 QPSRDVSHLM KILRRRYYLV EKAKDANIVG ILVGTLGVAG YLHIIEQMKD LIKAAGKKSY 120
  121 TLVMGRPNSA KLANFPECEV FVYVSCAQTA LLDSKDFLAP VITPFEAVLA FSRGREWTGE 180
  181 YLLDFKDLIT TDKPEISSTT E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [406-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EARFSFIKGG YVEDNCLEDN EEQPETSLAL AEVTEKALSI KNQNNDAVLY QGGAKSAIDY  60
   61 LKARSYRGLT GEYEGPAPDS VLTGRTGRAA GYNNEKKEIT Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle