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View Structure Prediction Details

Protein: gi|124000251, gi...
Organism: synthetic construct
Length: 407 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124000251, gi....

Description E-value Query
Range
Subject
Range
ADRM1_RAT, ADRM_RAT - (Q9JMB5) Adhesion regulating molecule 1 precursor (110 kDa cell membrane glycoprotein) (Gp110), Adhe...
517.0 [0..1] [407..1]
gi|109091383, gi... - gi|109091387|ref|XP_001089025.1| PREDICTED: adhesion regulating molecule 1 isoform 3 [Macaca mulatta...
510.0 [0..1] [407..1]
gi|73992416 - gi|73992416|ref|XP_534476.2| PREDICTED: similar to Adhesion regulating molecule 1 precursor (110 kDa...
510.0 [0..1] [407..1]
ADRM1_CHICK - Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1
509.0 [0..1] [407..1]
gi|2134668, gi|1... - pir||I52703 42K membrane glycoprotein - human, gi|1853971|dbj|BAA11023.1| Mr 110,000 antigen [Homo ...
509.0 [0..1] [407..1]
ADRM1_MOUSE - Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2
495.0 [0..1] [407..1]
ADRM1_XENTR - Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1 PE=2 SV=1
472.0 [0..3] [407..2]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSGALFPS LVPGSRGASN KYLVEFRAGK MSLKGTTVTP DKRKGLVYIQ QTDDSLIHFC  60
   61 WKDRTSGNVE DDLIIFPDDC EFKRVPQCPS GRVYVLKFKA GSKRLFFWMQ EPKT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQDEEHCRKV NEYLNNPPMP GALGASGSSG HELSALGGEG GLQSLLGNMS HSQLMQLIGP  60
   61 AGLGGLGGLG ALTGPGLASL LGSSGPPGSS SSSSSRSQSA AVTPSSTTSS TRAT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [229-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAPSAPAAAS ATSPSPAPSS GNGASTAASP TQPIQLSDLQ SILATMNVPA GPAGGQQVDL  60
   61 ASVLTPEIMA PILANADVQE RLLPYLPSGE SLPQTADEIQ NTLTSPQFQQ ALGMFSAALA 120
  121 SGQLGPLMCQ FGLPAEAVEA ANKGDVEAFA KAMQNNAKPE QKEGDTKDKK DEEEDMSLD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle