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View Structure Prediction Details

Protein: gi|124000251, gi...
Organism: synthetic construct
Length: 407 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124000251, gi....

Description E-value Query
Range
Subject
Range
ADRM1_RAT, ADRM_RAT - (Q9JMB5) Adhesion regulating molecule 1 precursor (110 kDa cell membrane glycoprotein) (Gp110), Adhe...
517.0 [0..1] [407..1]
gi|109091383, gi... - gi|109091387|ref|XP_001089025.1| PREDICTED: adhesion regulating molecule 1 isoform 3 [Macaca mulatta...
510.0 [0..1] [407..1]
gi|73992416 - gi|73992416|ref|XP_534476.2| PREDICTED: similar to Adhesion regulating molecule 1 precursor (110 kDa...
510.0 [0..1] [407..1]
ADRM1_CHICK - Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1
509.0 [0..1] [407..1]
gi|2134668, gi|1... - pir||I52703 42K membrane glycoprotein - human, gi|1853971|dbj|BAA11023.1| Mr 110,000 antigen [Homo ...
509.0 [0..1] [407..1]
ADRM1_MOUSE - Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2
495.0 [0..1] [407..1]
ADRM1_XENTR - Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1 PE=2 SV=1
472.0 [0..3] [407..2]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSGALFPS LVPGSRGASN KYLVEFRAGK MSLKGTTVTP DKRKGLVYIQ QTDDSLIHFC  60
   61 WKDRTSGNVE DDLIIFPDDC EFKRVPQCPS GRVYVLKFKA GSKRLFFWMQ EPKT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQDEEHCRKV NEYLNNPPMP GALGASGSSG HELSALGGEG GLQSLLGNMS HSQLMQLIGP  60
   61 AGLGGLGGLG ALTGPGLASL LGSSGPPGSS SSSSSRSQSA AVTPSSTTSS TRAT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [229-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAPSAPAAAS ATSPSPAPSS GNGASTAASP TQPIQLSDLQ SILATMNVPA GPAGGQQVDL  60
   61 ASVLTPEIMA PILANADVQE RLLPYLPSGE SLPQTADEIQ NTLTSPQFQQ ALGMFSAALA 120
  121 SGQLGPLMCQ FGLPAEAVEA ANKGDVEAFA KAMQNNAKPE QKEGDTKDKK DEEEDMSLD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle