YRC Public Data Repository - Protein Structure Prediction

Protein:	PLB4_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	673 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLB4_SCHPO.

Description	E-value	Query Range	Subject Range
SPAC1A6.03c - phospholipase gi\|19114106 - gi\|19114106\|ref\|NP_593194.1\| hypothetical protein SPAC1A6.03c [Schizosaccharomyces pombe 972h-]	772.0	[0..47]	[627..8]
PLB1_ASPFC - Lysophospholipase 1 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=plb1 PE=1 SV... PLB1_ASPFU - Lysophospholipase 1 OS=Aspergillus fumigatus GN=plb1 PE=2 SV=1 PLB1_ASPFU - Lysophospholipase 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)...	763.0	[0..44]	[644..18]
gi\|36244728 - gi\|36244728\|gb\|AAQ85123.1\| lysophospholipase [Aspergillus fumigatus]	760.0	[0..53]	[655..19]
PLB1_CANGA - Lysophospholipase 1 OS=Candida glabrata GN=PLB1 PE=3 SV=2 PLB1_CANGA - Lysophospholipase 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-...	758.0	[0..49]	[637..10]
PLB1_TORDE - Lysophospholipase OS=Torulaspora delbrueckii PE=1 SV=1	758.0	[0..55]	[659..15]
gi\|190407331 - gi\|190407331\|gb\|EDV10598.1\| phospholipase B [Saccharomyces cerevisiae RM11-1a] PLB3_YEAST - Lysophospholipase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PLB3 PE=1 SV=1 PLB3 - Phospholipase B (lysophospholipase) involved in phospholipid metabolism; hydrolyzes phosphatidylinos...	755.0	[0..46]	[618..11]
SPCC1450.09c - phospholipase PLB5_SCHPO - Putative lysophospholipase C1450.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1...	753.0	[0..1]	[629..1]

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Predicted Domain #1

Region A:
Residues: [1-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVNYIGLFA FVQISLTLAY PPGRVEISEI YDFEESSSYK GQDIDTSVLY TLSKRKPALV  60
   61 KRSTDASYAP FNVTCSNDNL LRPASEGLNE GEQSYINKRI SKVNSELRSF ISKTGLNVDL 120
  121 DKVVNSSDGP RLGIAFSGGG LRAMVNGGGA FNAFDSRFES DSPLSGLLQS AMYISGLSGG 180
  181 SWLVGSVAIN NFTNITYLRD NVWNLEHSVF APHGDNVIEN LNYYNDLRKE IDQKKHAGFD 240
  241 CSLTDLWGRA LSRKLVDAER GGPGITYSSM RNQSWFQNAD YPYPIIVADS RLEEETAIPA 300
  301 NTSIFEFTAY EFGTWDNGIK AFIPMEYVGT HLLDGVPPDK SCIHNYDNAG FVMGTSATLF 360
  361 NSFLLDWNEN VKKNDTYYDI LHAILEDLSK HQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.69897
Match:	1cjyA
Description:	Domain from cytosolic phospholipase A2; Cytosolic phospholipase A2 catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [393-673]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDIAPYPNPY QNYTTSNTSV VNAFEPYDTI DLVDGGEDRE NIPLWPLLHP QRFVDVVFAI  60
   61 DSTYNDPYGW PLGSSIVATY ERVVTFNANK SVDVRGFPYI PDENTIISLG LNTRPTFFGC 120
  121 DGKNTTAGNH DVDNNTPPLL VYFPNYPWTY YSNISTFTMS MDDKMANGIL ENAFMSTTQN 180
  181 NNESFAVCLA CAIIQRSLER KKLSTPTQCS SCFQEYCWDG TLATSTASVY DPTVMSAATT 240
  241 SRAPSGTTSG TASSTTSSSV ASATPTHKHW WDSIFEAKEN P

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.16
Match:	1cjyA
Description:	Domain from cytosolic phospholipase A2; Cytosolic phospholipase A2 catalytic domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits